Innovations in Electrophysiology

Network activity

Amaro D, Ferreiro DN, Grothe B, Pecka M (2021) Source identity shapes spatial preference in primary auditory cortex during active navigation. bioRxiv:2021.2001.2005.425444.

Balbi M, Xiao D, Jativa Vega M, Hu H, Vanni MP, Bernier LP, LeDue J, MacVicar B, Murphy TH (2021) Gamma frequency activation of inhibitory neurons in the acute phase after stroke attenuates vascular and behavioral dysfunction. Cell Rep 34:108696.

Brofiga M, Pisano M, Callegari F, Massobrio P (2021) Exploring the contribution of thalamic and hippocampal input on cortical dynamics in a brain-on-a-chip model. IEEE Transactions on Medical Robotics and Bionics:1-1.

Dasilva M, Camassa A, Navarro-Guzman A, Pazienti A, Perez-Mendez L, Zamora-López G, Mattia M, Sanchez-Vives MV (2021) Modulation of cortical slow oscillations and complexity across anesthesia levels. Neuroimage 224:117415.

Dias I, Levers M, Lamberti M, Hassink G, van Wezel R, le Feber J (2021) Consolidation of memory traces in cultured cortical networks requires low cholinergic tone, synchronized activity and high network excitability. J Neural Eng.

Dzyubenko E, Fleischer M, Manrique-Castano D, Borbor M, Kleinschnitz C, Faissner A, Hermann DM (2021) Inhibitory control in neuronal networks relies on the extracellular matrix integrity. Cell Mol Life Sci.

García-Rosales F, López-Jury L, González-Palomarez E, Wetekam J, Cabral-Calderin Y, Kiai A, Kössl M, Hechavarría J (2021) Echolocation reverses information flow in a cortical vocalization network. Nature Portfolio.

Heiney K, Valderhaug V, Ramstad O, Sandvig I, Sandvig A, Nichele S (2021) Hallmarks of Criticality in Neuronal Networks Depend on Cell Type and the Temporal Resolution of Neuronal Avalanches. International Journal of Unconventional Computing 16:303-326.

Izsak J, Seth H, Iljin M, Theiss S, Ågren H, Funa K, Aigner L, Hanse E, Illes S (2021) Differential acute impact of therapeutically effective and overdose concentrations of lithium on human neuronal single cell and network function. Transl Psychiatry 11:281.

Juárez-Vidales JJ, Pérez-Ortega JE, Lorea-Hernández JJI, Méndez-Salcido FA, Pena-Ortega F (2021) Configuration and dynamics of dominant inspiratory multineuronal activity patterns during eupnea and gasping generation in vitro. J Neurophysiol 0:null.

Kare SS, Rountree CM, Troy JB, Finan JD, Saggere L (2021) Neuromodulation using electroosmosis. J Neural Eng 18.

Khastkhodaei Z, Muthuraman M, Yang JW, Groppa S, Luhmann HJ (2021) Functional and directed connectivity of the cortico-limbic network in mice in vivo. Brain Struct Funct.

Laturnus SC, Hoffmann A, Chakrabarti S, Schwarz C (2021) Functional analysis of information rates conveyed by rat whisker-related trigeminal nuclei neurons. J Neurophysiol 0:null.

Lipponen A, Sahramäki J, Penttonen M, Nokia M (2021) Dentate gyrus single cell neuronal activity in rats during fixed interval task and subsequent sleep Scientific Reports.

Moreno-Ruiz B, Mellado S, Zamora-Moratalla A, Albarracín AL, Martín ED (2021) Increase in serum prolactin levels in females improves the performance of spatial learning by promoting changes in the circuital dynamics of the hippocampus. Psychoneuroendocrinology 124:105048.

Mossink B, Verboven AHA, van Hugte EJH, Gunnewiek TMK, Parodi G, Linda K, Schoenmaker C, Kleefstra T, Kozicz T, van Bokhoven H, Schubert D, Kasri NN, Frega M (2021) Human neuronal networks on micro-electrode arrays are a highly robust tool to study disease-specific genotype-phenotype correlations in vitro. bioRxiv:2021.2001.2020.427439.

Perkins EM, Burr K, Banerjee P, Mehta AR, Dando O, Selvaraj BT, Suminaite D, Nanda J, Henstridge CM, Gillingwater TH, Hardingham GE, Wyllie DJA, Chandran S, Livesey MR (2021) Altered network properties in C9ORF72 repeat expansion cortical neurons are due to synaptic dysfunction. Mol Neurodegener 16:13.

Pigareva Y, Gladkov A, Kolpakov V, Mukhina I, Bukatin A, Kazantsev VB, Pimashkin A (2021) Experimental Platform to Study Spiking Pattern Propagation in Modular Networks In Vitro. Brain Sci 11.

Pires Monteiro S, Voogd E, Muzzi L, De Vecchis G, Mossink B, Levers M, Hassink G, van Putten M, le Feber J, Hofmeijer J, Frega M (2021) Neuroprotective effect of hypoxic preconditioning and neuronal activation in a human model of the ischemic penumbra. J Neural Eng.

Rauti R, Ess A, Le Roi B, Kreinin Y, Epshtein M, Korin N, Maoz BM (2021) Transforming a well into a chip: A modular 3D-printed microfluidic chip. APL Bioengineering 5:026103.

Ren X, Gomez JL, Bashar MK, Ji J, Can UI, Chang H-C, Shukla N, Datta S, Zorlutuna P (2021) Cardiac Muscle Cell-Based Coupled Oscillator Network for Collective Computing. Advanced Intelligent Systems n/a:2000253.

Rodríguez Díaz JC, Jenkins PM, Pritchett DL, Jones KS (2021) A Novel Approach to Study Gamma-Band Coherence in Ex Vivo Hippocampal Slices from a Mouse Model of Bipolar Disorder. bioRxiv:2021.2001.2008.425938.

Sanchez-Aguilera A, Wheeler DW, Jurado-Parras T, Valero M, Nokia MS, Cid E, Fernandez-Lamo I, Sutton N, García-Rincón D, de la Prida LM, Ascoli GA (2021) An update to Hippocampome.org by integrating single-cell phenotypes with circuit function in vivo. PLoS Biol 19:e3001213.

Schneider WT, Vas S, Nicol AU, Morton AJ (2021) Abnormally abrupt transitions from sleep-to-wake in Huntington's disease sheep (Ovis aries) are revealed by automated analysis of sleep/wake transition dynamics. PLoS ONE 16:e0251767.

Sosulina L, Mittag M, Geis HR, Hoffmann K, Klyubin I, Qi Y, Steffen J, Friedrichs D, Henneberg N, Fuhrmann F, Justus D, Keppler K, Cuello AC, Rowan MJ, Fuhrmann M, Remy S (2021) Hippocampal hyperactivity in a rat model of Alzheimer's disease. J Neurochem.

Tauskela JS, Kuebler ES, Thivierge J-P, Aylsworth A, Hewitt M, Zhao X, Mielke JG, Martina M (2021) Resilience of network activity in preconditioned neurons exposed to ‘stroke-in-a-dish’ insults. Neurochemistry International 146:105035.

Teneggi J, Chen X, Balu A, Barrett C, Grisolia G, Lucia U, Dzakpasu R (2021) Entropy estimation within in vitro neural-astrocyte networks as a measure of development instability. Physical Review E 103:042412.

Thériault RK, Manduca JD, Perreault ML (2021) Sex differences in innate and adaptive neural oscillatory patterns link resilience and susceptibility to chronic stress in rats. J Psychiatry Neurosci 46:E258-E270.

Van Lent J, Verstraelen P, Asselbergh B, Adriaenssens E, Mateiu L, Verbist C, De Winter V, Eggermont K, Van Den Bosch L, De Vos WH, Timmerman V (2021) Induced pluripotent stem cell-derived motor neurons of CMT type 2 patients reveal progressive mitochondrial dysfunction. Brain.

Vas S, Nicol AU, Kalmar L, Miles J, Morton AJ (2021) Abnormal patterns of sleep and EEG power distribution during non-rapid eye movement sleep in the sheep model of Huntington's disease. Neurobiol Dis 155:105367.

Wang Q, Mergia E, Koesling D, Mittmann T (2021) Nitric oxide/cGMP signaling via guanylyl cyclase isoform 1 mediates early changes in synaptic transmission and brain edema formation after TBI. Journal of Neurotrauma 0:null.

Almad AA, Taga A, Joseph J, Welsh C, Patankar A, Gross SK, Richard J-P, Pokharel A, Lillo M, Dastgheyb R, Eggan K, Haughey N, Contreras JE, Maragakis NJ (2020) Connexin 43 hemichannels mediate spatial and temporal disease spread in ALS. bioRxiv:2020.2003.2014.990747.

Chen M, Maimaitili M, Habekost M, Gill KP, Mermet-Joret N, Nabavi S, Febbraro F, Denham M (2020) Rapid generation of regionally specified CNS neurons by sequential patterning and conversion of human induced pluripotent stem cells. Stem Cell Res 48:101945.

Ciba M, Bestel R, Nick C, de Arruda GF, Peron T, Henrique CC, Costa LDF, Rodrigues FA, Thielemann C (2020) Comparison of Different Spike Train Synchrony Measures Regarding Their Robustness to Erroneous Data from Bicuculline-Induced Epileptiform Activity. Neural Comput:1-25.

Clark M (2020) Effects of Electrical Stimulation of NAc Afferents on VP Neurons’ Tonic Firing. Frontiers in Cellular Neuroscience 14.

Costa AR, Sousa SC, Pinto-Costa R, Mateus JC, Lopes CD, Costa AC, Rosa D, Machado D, Pajuelo L, Wang X, Zhou FQ, Pereira AJ, Sampaio P, Rubinstein BY, Mendes Pinto I, Lampe M, Aguiar P, Sousa MM (2020) The membrane periodic skeleton is an actomyosin network that regulates axonal diameter and conduction. Elife 9.

Del Pino I, Tocco C, Magrinelli E, Marcantoni A, Ferraguto C, Tomagra G, Bertacchi M, Alfano C, Leinekugel X, Frick A, Studer M (2020) COUP-TFI/Nr2f1 Orchestrates Intrinsic Neuronal Activity during Development of the Somatosensory Cortex. Cereb Cortex.

Dominguez-Morales JP, Buccelli S, Gutierrez-Galan D, Colombi I, Jimenez-Fernandez A, Chiappalone M (2020) Real-time detection of bursts in neuronal cultures using a Neuromorphic Auditory Sensor and Spiking Neural Networks. bioRxiv:2020.2005.2020.105593.

Dzyubenko E, Fleischer M, Manrique-Castano D, Borbor M, Kleinschnitz C, Faissner A, Hermann DM (2020) Extracellular matrix supports excitation-inhibition balance in neuronal networks by stabilizing inhibitory synapses. bioRxiv:2020.2007.2013.200113.

Farrokhi B, Erfanian A (2020) A state-based probabilistic method for decoding hand position during movement from ECoG signals in non-human primate. J Neural Eng 17:026042.

Frega M, Selten M, Mossink B, Keller JM, Linda K, Moerschen R, Qu J, Koerner P, Jansen S, Oudakker A, Kleefstra T, van Bokhoven H, Zhou H, Schubert D, Nadif Kasri N (2020) Distinct Pathogenic Genes Causing Intellectual Disability and Autism Exhibit a Common Neuronal Network Hyperactivity Phenotype. Cell Rep 30:173-186 e176.

García-Rosales F, López-Jury L, González-Palomares E, Cabral-Calderín Y, Hechavarría JC (2020) Fronto-Temporal Coupling Dynamics During Spontaneous Activity and Auditory Processing in the Bat Carollia perspicillata. Frontiers in Systems Neuroscience 14.

García-Rosales F, López-Jury L, González-Palomares E, Cabral-Calderin Y, Kössl M, Hechavarria JC (2020) Phase-amplitude coupling profiles differ in frontal and auditory cortices. bioRxiv:2020.2005.2005.078667.

García-Rosales F, López-Jury L, González-Palomares E, Cabral-Calderin Y, Kössl M, Hechavarria JC (2020) Phase-amplitude coupling profiles differ in frontal and auditory cortices of bats. Eur J Neurosci.

Georgescu Margarint EL, Georgescu IA, Zahiu CD, Șteopoaie AR, Tirlea SA, Popa D, Zagrean AM, Zagrean L (2020) Reduced Interhemispheric Coherence after Cerebellar Vermis Output Perturbation. Brain Sci 10.

Ghiasvand S, Dussourd CR, Liu J, Song Y, Berdichevsky Y (2020) Variability of seizure-like activity in an in vitro model of epilepsy depends on the electrical recording method. Heliyon 6.

Guaraldi M, Lee S, Shea TB (2020) Synaptic Signals from Glutamate-Treated Neurons Induce Aberrant Post-Synaptic Signals in Untreated Neuronal Networks. TONEUJ 14.

Jacob S (2020) Neurophysiological Assessment of Brain Network Activity Involved in Cognitive Processing in Animal Models of Alzheimer’s Disease Department of Brain and Cognition Faculty of Psychology & Educational Sciences.

Jalewa J, Todd J, Michie PT, Hodgson DM, Harms L (2020) Do rat auditory event related potentials exhibit human mismatch negativity attributes related to predictive coding? Hearing Research:107992.

Kanders K, Lee HW, Hong N, Nam Y, Stoop R (2020) Fingerprints of a second order critical line in developing neural networks. Communications Physics 3:13.

Kumar R, Huang Y-T, Chen CC, Tzeng S-F, Chan CK (2020) Astrocytic regulation of synchronous bursting in cortical cultures: from local to global. bioRxiv:870915.

Lezmy J, Gelman H, Katsenelson M, Styr B, Tikochinsky E, Lipinsky M, Peretz A, Slutsky I, Attali B (2020) M-current inhibition in hippocampal excitatory neurons triggers intrinsic and synaptic homeostatic responses at different temporal scales. J Neurosci.

Lisitsyn D, Grothe I, Kreiter AK, Ernst UA (2020) Signal transfer of visual stimuli to V4 occurs in gamma-rhythmic, pulsed information packages. bioRxiv:2020.2002.2003.931956.

Lisitsyn D, Grothe I, Kreiter AK, Ernst UA (2020) Visual stimulus content in V4 is conveyed by gamma-rhythmic information packages. J Neurosci.

Liu Y, McAfee SS, Sillitoe RV, Heck DH (2020) Cerebellar modulation of gamma coherence between prefrontal cortex and hippocampus during spatial working memory decision making. bioRxiv:2020.2003.2016.994541.

Lopez-Madrona VJ, Pérez-Montoyo E, Álvarez-Salvado E, Moratal D, Herreras O, Pereda E, Mirasso CR, Canals S (2020) Different theta frameworks coexist in the hippocampus and are coordinated during memory-guided exploration and novelty detection. bioRxiv:418434.

Lozano-Montes L, Dimanico M, Mazloum R, Li W, Nair J, Kintscher M, Schneggenburger R, Harvey M, Rainer G (2020) Optogenetic Stimulation of Basal Forebrain Parvalbumin Neurons Activates the Default Mode Network and Associated Behaviors. Cell Rep 33:108359.

Manzati M, Sorbo T, Giugliano M, Ballerini L (2020) Foetal neural progenitors contribute to postnatal circuits formation ex vivo: an electrophysiological investigation. Mol Brain 13:78.

McDonald M, Sebinger D, Brauns L, Gonzalez-Cano L, Menuchin-Lasowski Y, Psathaki O-E, Stumpf A, Rauen T, Schöler H, Jones PD (2020) A mesh microelectrode array for non-invasive electrophysiology within neural organoids. bioRxiv:2020.2009.2002.279125.

Neto E, Leitão L, Mateus J, Sousa DM, Conceição F, Alves CJ, Oreffo ROC, West J, Aguiar P, Lamghari M (2020) Sensory neurons sprouting is dependent on osteoclast-derived extracellular vesicles involving the activation of epidermal growth factor receptors. bioRxiv:259218.

Nokia MS, Waselius T, Sahramaki J, Penttonen M (2020) Most hippocampal CA1 pyramidal cells in rabbits increase firing during awake sharp-wave ripples and some do so in response to external stimulation and theta. J Neurophysiol.

Reasmussen D (2020) Effect of Ketamine Treatment on Neuronal Oscillatory Activity in the Nucleus Accumbens and Hippocampus in an Animal Model of Treatment-Resistant Depression.

Rienecker KDA, Poston RG, Segales JS, Saha RN (2020) Mild membrane depolarization in neurons induces immediate early gene transcription and acutely subdues responses to successive stimulus. bioRxiv:2020.2007.2023.217844.

Rodriguez AR, Anderson ED, O’Neill KM, McEwan PP, Vigilante NF, Kwon M, Akum BF, Stawicki TM, Meaney DF, Firestein BL (2020) Cytosolic PSD-95 Interactor Alters Functional Organization of Neural Circuits and AMPA Receptor Signaling Independent of PSD-95 Binding. Network Neuroscience:1-72.

Sardi S, Vardi R, Meir Y, Tugendhaft Y, Hodassman S, Goldental A, Kanter I (2020) Brain experiments imply adaptation mechanisms which outperform common AI learning algorithms. Sci Rep 10:6923.

Scanarotti C, Vernazza S, Tirendi S, Calzia D, Alloisio S, Novellino A, Panfoli I, Bassi AM (2020) Evaluation of Potential Risks to Human Health and Ecosystems During Exposure to Discarded Laboratory Chemical Mixtures by In Vitro Multimodel Approach. Applied In Vitro Toxicology 6:131-143.

Solomon E, Davis-Anderson K, Hovde B, Micheva-Viteva SN, Harris JF, Twary SN, Iyer R (2020) Global Transcriptome Profile of the Developmental Principles of in Vitro iPSC-to-Motor Neuron Differentiation. BMC Molecular and Cell Biology.

Sosulina L, Mittag M, Geis H-R, Hoffmann K, Klyubin I, Qi Y, Steffen J, Friedrichs D, Henneberg N, Fuhrmann F, Justus D, Keppler K, Cuello AC, Rowan MJ, Fuhrmann M, Remy S (2020) Hippocampal hyperactivity in a rat model of Alzheimer’s disease. bioRxiv:2020.2006.2009.141598.

Tanskanen JMA, Ahtiainen A, Hyttinen JAK (2020) Toward Closed-Loop Electrical Stimulation of Neuronal Systems: A Review. Bioelectricity 0:null.

Terlau J, Yang JW, Khastkhodaei Z, Seidenbecher T, Luhmann HJ, Pape HC, Luttjohann A (2020) Spike-wave discharges in absence epilepsy: Segregation of electrographic components reveals distinct pathways of seizure activity. J Physiol.

Tharaneetharan A, Cole M, Norman B, Romero NC, Wooltorton JRA, Harrington MA, Sun J (2020) Functional Abnormalities of Cerebellum and Motor Cortex in Spinal Muscular Atrophy Mice. Neuroscience 452:78-97.

Theriault RK, Manduca JD, Blight CR, Khokhar JY, Akhtar TA, Perreault ML (2020) Acute mitragynine administration suppresses cortical oscillatory power and systems theta coherence in rats. J Psychopharmacol:269881120914223.

Valderhaug VD, Heiney K, Ramstad OH, Bråthen G, Kuan W-L, Nichele S, Sandvig A, Sandvig I (2020) Criticality as a measure of developing proteinopathy in engineered human neural networks. bioRxiv:2020.2005.2003.074666.

Valderhaug VD, Ramstad OH, van de Wijdeven R, Heiney K, Nichele S, Sandvig A, Sandvig I (2020) Structural and functional alterations associated with the LRRK2 G2019S mutation revealed in structured human neural networks. bioRxiv:2020.2005.2002.073726.

Vemula SK, Malci A, Junge L, Lehmann A-C, Rama R, Hradsky J, Matute RA, Weber A, Prigge M, Naumann M, Kreutz MR, Seidenbecher CI, Gundelfinger ED, Herrera-Molina R (2020) TRAF6 controls spinogenesis instructing synapse density and neuronal activity through binding neuroplastin. bioRxiv:768341.

Vernekar VN, LaPlaca MC (2020) 3-D multi-electrode arrays detect early spontaneous electrophysiological activity in 3-D neuronal-astrocytic co-cultures. Biomedical Engineering Letters.

Voskobiynyk Y, Roth JR, Cochran JN, Rush T, Carullo NVN, Mesina JS, Waqas M, Vollmer RM, Day JJ, McMahon LL, Roberson ED (2020) Alzheimer’s disease risk gene BIN1 induces Tau-dependent network hyperexcitability. bioRxiv:2020.2003.2029.014720.

Wanzenboeck HD, Scholze P, Mika JK (2020) Imaging and Electrophysiology of Individual Neurites Functionally Isolated in Microchannels. In: Neurohistology and Imaging Techniques, Neuromethods (Pelc R, Walz W, Doucette J, eds). New York: Humana, New York, NY.

Wegrzyn D, Manitz MP, Kostka M, Freund N, Juckel G, Faissner A (2020) Poly I:C-induced maternal immune challenge reduces perineuronal net area and raises spontaneous network activity of hippocampal neurons in vitro. Eur J Neurosci.

Wegrzyn D, Wegrzyn C, Tedford K, Fischer K-D, Faissner A (2020) Deletion of the Nucleotide Exchange Factor Vav3 Enhances Axonal Complexity and Synapse Formation but Tampers Activity of Hippocampal Neuronal Networks In Vitro. International Journal of Molecular Sciences 21:856.

Weineck K, Garcia-Rosales F, Hechavarria JC (2020) Neural oscillations in the fronto-striatal network predict vocal output in bats. PLoS Biol 18:e3000658.

Wickham J, Corna A, Schwarz N, Uysal B, Layer N, Honegger JB, Wuttke TV, Koch H, Zeck G (2020) Human Cerebrospinal Fluid Induces Neuronal Excitability Changes in Resected Human Neocortical and Hippocampal Brain Slices. Frontiers in Neuroscience 14.

Wu Y, Wang M, Wang Y, Yang H, Qi H, Seicol BJ, Xie R, Guo L (2020) A neuronal wiring platform through microridges for rationally engineered neural circuits. APL Bioengineering 4:046106.

Zafeiriou MP, Bao G, Hudson J, Halder R, Blenkle A, Schreiber MK, Fischer A, Schild D, Zimmermann WH (2020) Developmental GABA polarity switch and neuronal plasticity in Bioengineered Neuronal Organoids. Nat Commun 11:3791.

Zhang X, Yeh FC, Ju H, Jiang Y, Quan GFW, VanDongen AMJ (2020) Familiarity detection and memory consolidation in cortical assemblies. eNeuro.

Zheng Y, Zhang K, Dong L, Tian C (2020) Study on the mechanism of high-frequency stimulation inhibiting low-Mg2+-induced epileptiform discharges in juvenile rat hippocampal slices. Brain Research Bulletin 165:1-13.

Zhong W, Yuan Y, Gu X, Kim SI, Chin R, Loye M, Dix TA, Wei L, Yu SP (2020) Neuropsychological Deficits Chronically Developed after Focal Ischemic Stroke and Beneficial Effects of Pharmacological Hypothermia in the Mouse. Aging and disease 11:1-16.

Ambrosini AE, Deshmukh N, Berry MJ, Enquist LW, Hogue IB (2019) Alpha Herpesvirus Egress and Spread from Neurons Uses Constitutive Secretory Mechanisms Independent of Neuronal Firing Activity. bioRxiv:729830.

Bansal R, Engle SE, Antonellis PJ, Whitehouse LS, Baucum AJ, 2nd, Cummins TR, Reiter JF, Berbari NF (2019) Hedgehog Pathway Activation Alters Ciliary Signaling in Primary Hypothalamic Cultures. Front Cell Neurosci 13:266.

Bubnys AV, Kandel H, Kow L-M, Pfaff DW, Tabansky I (2019) Hindbrain V2a neurons impose rhythmic activity on motor neurons in an in vitro reticulospinal circuit. bioRxiv:620674.

Buccelli S, Bornat Y, Colombi I, Ambroise M, Martines L, Pasquale V, Bisio M, Tessadori J, Nowak P, Grassia F, Averna A, Tedesco M, Bonifazi P, Difato F, Massobrio P, Levi T, Chiappalone M (2019) A neuroprosthetic system to restore neuronal communication in modular networks. bioRxiv:514836.

Castano-Prat P, Perez-Mendez L, Perez-Zabalza M, Sanfeliu C, Giménez-Llort L, Sanchez-Vives MV (2019) Altered slow (<1Hz) and fast (beta and gamma) neocortical oscillations in the 3xTg-AD mouse model of Alzheimer’s disease under anesthesia. Neurobiology of Aging.

Dasilva M, Navarro-Guzman A, Ortiz-Romero P, Camassa A, Munoz-Cespedes A, Campuzano V, Sanchez-Vives MV (2019) Altered Neocortical Dynamics in a Mouse Model of Williams-Beuren Syndrome. Mol Neurobiol.

Datta Chaudhuri A, Dasgheyb RM, DeVine LR, Bi H, Cole RN, Haughey NJ (2019) Stimulus-dependent modifications in astrocyte-derived extracellular vesicle cargo regulate neuronal excitability. Glia 0.

del Pino I, Tocco C, Magrinelli E, Marcantoni A, Ferraguto C, Tomagra G, Alfano C, Leinekugel X, Frick A, Studer M (2019) Intrinsic neuronal excitability and spontaneous activity underlie cortical abnormalities upon Nr2f1/COUP-TFI deficiency. bioRxiv:728402.

Djemil S, Chen X, Zhang Z, Lee J, Rauf M, Pak DTS, Dzakpasu R (2019) Activation of nicotinic acetylcholine receptors induces potentiation and synchronization within in vitro hippocampal networks. J Neurochem:e14938.

Ferreira-Fernandes E, Quintino C, Remondes M (2019) A Gradient of Hippocampal Inputs to the Medial Mesocortex. bioRxiv:535047.

Frega M, Linda K, Keller JM, Gumus-Akay G, Mossink B, van Rhijn JR, Negwer M, Klein Gunnewiek T, Foreman K, Kompier N, Schoenmaker C, van den Akker W, van der Werf I, Oudakker A, Zhou H, Kleefstra T, Schubert D, van Bokhoven H, Nadif Kasri N (2019) Neuronal network dysfunction in a model for Kleefstra syndrome mediated by enhanced NMDAR signaling. Nat Commun 10:4928.

Frega M, Linda K, Keller JM, Gümüş-Akay G, Mossink B, van Rhijn J-R, Negwer M, Gunnewiek TK, Foreman K, Kompier N, Schoenmaker C, van den Akker W, Oudakker A, Zhou H, Kleefstra T, Schubert D, van Bokhoven H, Kasri NN (2019) Neuronal network dysfunction in a human model for Kleefstra syndrome mediated by enhanced NMDAR signaling. bioRxiv:585596.

Garcia-Rosales F, Rohrig D, Weineck K, Rohm M, Lin YH, Cabral-Calderin Y, Kossl M, Hechavarria JC (2019) Laminar specificity of oscillatory coherence in the auditory cortex. Brain Struct Funct.

Gottschling C, Wegrzyn D, Denecke B, Faissner A (2019) Elimination of the four extracellular matrix molecules tenascin-C, tenascin-R, brevican and neurocan alters the ratio of excitatory and inhibitory synapses. Sci Rep 9:13939.

Gronskaya E, von der Behrens W (2019) Evoked response strength in primary auditory cortex predicts performance in a spectro-spatial discrimination task in rats. J Neurosci.

Gururajan A, van de Wouw M, Boehme M, Becker T, O'Connor R, Bastiaanssen TFS, Moloney GM, Lyte JM, Ventura Silva AP, Merckx B, Dinan TG, Cryan JF (2019) Resilience to chronic stress is associated with specific neurobiological, neuroendocrine and immune responses. Brain Behav Immun.

Hanna L, Kawalek TJ, Beall C, Ellacott KLJ (2019) Changes in neuronal activity across the mouse ventromedial nucleus of the hypothalamus in response to low glucose: evaluation using an extracellular multi-electrode array approach. J Neuroendocrinol:e12824.

Hasan MF, Ghiasvand S, Wang H, Miwa JM, Berdichevsky Y (2019) Neural layer self-assembly in geometrically confined rat and human 3D cultures. Biofabrication.

Heiney K, Huse Ramstad O, Sandvig I, Sandvig A, Nichele S (2019) Assessment and manipulation of the computational capacity of in vitro neuronal networks through criticality in neuronal avalanches.

Heining K, Kilias A, Janz P, Haussler U, Kumar A, Haas CA, Egert U (2019) Bursts with high and low load of epileptiform spikes show context-dependent correlations in epileptic mice. eNeuro.

Iturra-Mena AM, Aguilar-Rivera M, Arriagada-Solimano M, Pérez-Valenzuela C, Fuentealba P, Dagnino-Subiabre A (2019) Impact of Stress on Gamma Oscillations in the Rat Nucleus Accumbens During Spontaneous Social Interaction. Frontiers in Behavioral Neuroscience 13.

Jackson MR, Loring KE, Homan CC, Thai MH, Maattanen L, Arvio M, Jarvela I, Shaw M, Gardner A, Gecz J, Shoubridge C (2019) Heterozygous loss of function of IQSEC2/Iqsec2 leads to increased activated Arf6 and severe neurocognitive seizure phenotype in females. Life Sci Alliance 2.

Jacob S, Davies G, De Bock M, Hermans B, Wintmolders C, Bottelbergs A, Borgers M, Theunis C, Van Broeck B, Manyakov NV, Balschun D, Drinkenburg W (2019) Neural oscillations during cognitive processes in an App knock-in mouse model of Alzheimer's disease pathology. Sci Rep 9:16363.

Jaudon F, Thalhammer A, Cingolani LA (2019) Correction of β3 integrin haplo-insufficiency by CRISPRa normalizes cortical network activity. bioRxiv:664706.

Kanders K, Stoop N, Stoop R (2019) Universality in the firing of minicolumnar-type neural networks. Chaos: An Interdisciplinary Journal of Nonlinear Science 29:093109.

Kizner V, Naujock M, Fischer S, Jager S, Reich S, Schlotthauer I, Zuckschwerdt K, Geiger T, Hildebrandt T, Lawless N, Macartney T, Dorner-Ciossek C, Gillardon F (2019) CRISPR/Cas9-mediated Knockout of the Neuropsychiatric Risk Gene KCTD13 Causes Developmental Deficits in Human Cortical Neurons Derived from Induced Pluripotent Stem Cells. Mol Neurobiol.

Klein Gunnewiek TM, Van Hugte EJH, Frega M, Guardia GS, Foreman KB, Panneman D, Mossink B, Linda K, Keller JM, Schubert D, Cassiman D, Morava E, Rodenburg R, Perales-Clemente E, Nelson TJ, Kasri NN, Kozicz T (2019) Mitochondrial dysfunction impairs human neuronal development and reduces neuronal network activity and synchronicity. bioRxiv:720227.

Koch H, Niturad CE, Theiss S, Bien CG, Elger C, Wandinger KP, Vincent A, Malter M, Kortvelyessy P, Lerche H, Dihne M (2019) In vitro neuronal network activity as a new functional diagnostic system to detect effects of Cerebrospinal fluid from autoimmune encephalitis patients. Sci Rep 9:5591.

Liu H, Bridges D, Randall C, Solla SA, Wu B, Hansma P, Yan X, Kosik KS, Bouchard K (2019) In vitro validation of in silico identified inhibitory interactions. J Neurosci Methods 321:39-48.

Loonen ICM, Jansen NA, Cain SM, Schenke M, Voskuyl RA, Yung AC, Bohnet B, Kozlowski P, Thijs RD, Ferrari MD, Snutch TP, van den Maagdenberg A, Tolner EA (2019) Brainstem spreading depolarization and cortical dynamics during fatal seizures in Cacna1a S218L mice. Brain 142:412-425.

Marcuzzo S, Terragni B, Bonanno S, Isaia D, Cavalcante P, Cappelletti C, Ciusani E, Rizzo A, Regalia G, Yoshimura N, Ugolini GS, Rasponi M, Bechi G, Mantegazza M, Mantegazza R, Bernasconi P, Minati L (2019) Hyperexcitability in Cultured Cortical Neuron Networks from the G93A-SOD1 Amyotrophic Lateral Sclerosis Model Mouse and its Molecular Correlates. Neuroscience 416:88-99.

Marta P, Ilaria C, Matteo F, Freschi A, Bandarabadi M, Andrea A, Encarnación BM, Adamantidis AR, Roberto A, Matteo C, Michela C, Valter T (2019) The paternally imprinted gene Snord116 regulates cortical neuronal activity. bioRxiv:809822.

McAfee SS, Liu Y, Sillitoe RV, Heck DH (2019) Cerebellar Lobulus Simplex and Crus I Differentially Represent Phase and Phase Difference of Prefrontal Cortical and Hippocampal Oscillations. Cell Rep 27:2328-2334 e2323.

Meng C, Yang X, Liu Y, Zhou Y, Rui J, Li S, Xu C, Zhuang Y, Lao J, Zhao X (2019) Decreased expression of lncRNA Malat1 in rat spinal cord contributes to neuropathic pain by increasing neuron excitability after brachial plexus avulsion. J Pain Res 12:1297-1310.

Mohseni Ahooyi T, Torkzaban B, Shekarabi M, Tahrir FG, Decoppet EA, Cotto B, Langford D, Amini S, Khalili K (2019) Perturbation of synapsins homeostasis through HIV-1 Tat-mediated suppression of BAG3 in primary neuronal cells. Cell Death Dis 10:473.

Morrisroe E (2019) Multielectrode Arrays: A tool for modellig genetic epilepsy. FACULTY OF MEDICINE, DENTISTRY & HEALTH SCIENCES

Okujeni S, Egert U (2019) Self-organization of modular network architecture by activity-dependent neuronal migration and outgrowth. Elife 8.

Papasavvas CA, Parrish RR, Trevelyan AJ (2019) The spread of gap-junction mediated activity in neocortex is modulated by extracellular potassium. bioRxiv:669226.

Qi XR, Verwer RWH, Bao AM, Balesar RA, Luchetti S, Zhou JN, Swaab DF (2019) Human Brain Slice Culture: A Useful Tool to Study Brain Disorders and Potential Therapeutic Compounds. Neurosci Bull.

Roberts TP, Kern FB, Fernando C, Szathmary E, Husbands P, Philippides AO, Staras K (2019) Encoding Temporal Regularities and Information Copying in Hippocampal Circuits. Sci Rep 9:19036.

Savarraj JP, Kelly KC, DeCoster MA (2019) Early glioma is associated with abnormal electrical events in cortical cultures. Med Biol Eng Comput.

Sfakianou A (2019) Functional Characterization of Human iPSC-Derived Neural Networks using MEA Systems for in vitro Modeling of Psychiatric Disorders.

Shi Y, van Rhijn JR, Bormann M, Mossink B, Frega M, Hakobjan M, Kittel-Schneider S, Schubert D, Brunner H, Franke B, Kasri NN (2019) Brunner Syndrome associated MAOA dysfunction in human induced dopaminergic neurons results in dysregulated NMDAR expression and increased network activity. bioRxiv:741108.

Shirokova OM, Sokolov RA, Korotchenko SA, Pershin VI, Ermin KV, Glyavina MM, Zhuchenko M, Andreeva NN, Shchelchkova NA, Mukhina IV (2019) Neurotropic Effect of Carbamylated Darbepoietin on the Model of Primary Hippocampal Culture. Sovremennye tehnologii v medicine 11:87.

Siemann JK, Green NH, Reddy N, McMahon DG (2019) Sequential Photoperiodic Programing of Serotonin Neurons, Signaling and Behaviors During Prenatal and Postnatal Development. Front Neurosci 13:459.

Styr B, Gonen N, Zarhin D, Ruggiero A, Atsmon R, Gazit N, Braun G, Frere S, Vertkin I, Shapira I, Harel M, Heim LR, Katsenelson M, Rechnitz O, Fadila S, Derdikman D, Rubinstein M, Geiger T, Ruppin E, Slutsky I (2019) Mitochondrial Regulation of the Hippocampal Firing Rate Set Point and Seizure Susceptibility. Neuron 102:1009-1024 e1008.

Szádeczky-Kardoss K, Varró P, Szűcs A, Borbély S, Világi I (2019) Kainate receptors have different modulatory effect in seizure-like events and slow rhythmic activity in entorhinal cortex ex vivo. Brain Research Bulletin 153:279-288.

Tang T, Blenkinsop TA, Lang EJ (2019) Complex spike synchrony dependent modulation of rat deep cerebellar nuclear activity. Elife 8:e40101.

Thériault R-K, Manduca JD, Perreault ML (2019) Sex differences in innate and adaptive neural oscillatory patterns predict resilience and susceptibility to chronic stress in rats. bioRxiv:720011.

Tort-Colet N, Capone C, Sanchez-Vives MV, Mattia M (2019) Attractor competition enriches cortical dynamics during awakening from anesthesia. bioRxiv:517102.

Val-Calvo M, Álvarez-Sánchez JR, Alegre-Cortés J, de la Paz-López F, Ferrández-Vicente JM, Fernández-Jover E, Val-Calvo I (2019) Frequency variation analysis in neuronal cultures for stimulus response characterization. Neural Comput & Applic.

Valderhaug VD, Glomm WR, Sandru EM, Yasuda M, Sandvig A, Sandvig I (2019) Formation of neural networks with structural and functional features consistent with small-world network topology on surface-grafted polymer particles. Royal Society Open Science 6:191086.

Van De Vijver S, Missault S, Van Soom J, Van Der Veken P, Augustyns K, Joossens J, Dedeurwaerdere S, Giugliano M (2019) The effect of pharmacological inhibition of Serine Proteases on neuronal networks in vitro. PeerJ 7:e6796.

van der Bourg A, Yang JW, Stuttgen MC, Reyes-Puerta V, Helmchen F, Luhmann HJ (2019) Temporal refinement of sensory-evoked activity across layers in developing mouse barrel cortex. Eur J Neurosci.

van der Velden L, Vinck MA, Werkman TR, Wadman WJ (2019) Modulation of Functional Connectivity Between Dopamine Neurons of the Rat Ventral Tegmental Area in vitro. Frontiers in Integrative Neuroscience 13.

van Loo KMJ, Rummel CK, Pitsch J, Alexander Muller J, Bikbaev AF, Martinez Chavez E, Blaess S, Dietrich D, Heine M, Becker AJ, Schoch S (2019) Calcium channel subunit alpha2delta4 is regulated by early growth response 1 and facilitates epileptogenesis. J Neurosci.

Vo HT, Phillips ML, Herskowitz JH, King GD (2019) Klotho deficiency affects the spine morphology and network synchronization of neurons. Mol Cell Neurosci 98:1-11.

Walter A, van der Spek L, Hardy E, Bemelmans AP, Rouach N, Rancillac A (2019) Structural and functional connections between the median and the ventrolateral preoptic nucleus. Brain Struct Funct.

Weineck K, García-Rosales F, Hechavarría JC (2019) Fronto-striatal oscillations predict vocal output in bats. bioRxiv:724112.

Wickham J, Corna A, Schwarz N, Uysal B, Layer N, Wuttke TV, Koch H, Zeck G (2019) Human cerebrospinal fluid induces neuronal excitability changes in resected human neocortical and hippocampal brain slices. bioRxiv:730036.

Wülfing JM, Kumar SS, Boedecker J, Riedmiller M, Egert U (2019) Adaptive long-term control of biological neural networks with Deep Reinforcement Learning. Neurocomputing.

Zhang Z, Qiu W, Gong H, Li G, Jiang Q, Liang P, Zheng H, Zhang P (2019) Low-intensity ultrasound suppresses low-Mg(2+)-induced epileptiform discharges in juvenile mouse hippocampal slices. J Neural Eng 16:036006.

Zhao Y, Guzman E, Audouard M, Cheng Z, Hansma P, Kosik KS, Petzold L (2019) A Deep Learning Framework for Classification of in vitro Multi-Electrode Array Recordings. arXiv 1906.02241.

Albrecht MA, Vaughn CN, Erickson MA, Clark SM, Tonelli LH (2018) Time and frequency dependent changes in resting state EEG functional connectivity following lipopolysaccharide challenge in rats. PLoS ONE 13:e0206985.

Alshawaf AJ, Viventi S, Qiu W, D'Abaco G, Nayagam B, Erlichster M, Chana G, Everall I, Ivanusic J, Skafidas E, Dottori M (2018) Phenotypic and Functional Characterization of Peripheral Sensory Neurons derived from Human Embryonic Stem Cells. Sci Rep 8:603.

An S, Zhao YF, Lu XY, Wang ZG (2018) Quantitative evaluation of extrinsic factors influencing electrical excitability in neuronal networks: Voltage Threshold Measurement Method (VTMM). Neural Regen Res 13:1026-1035.

Bang S, Lee BJ, Lee SR, Na S, Jang JM, Kang M, Kim SY, Min DH, Song JM, Ho WK, Jeon NL (2018) Reliable autapse formation using the single-cell patterning method. Biofabrication 11:015008.

Bar El Y, Kanner S, Barzilai A, Hanein Y (2018) Activity changes in neuron-astrocyte networks in culture under the effect of norepinephrine. PLoS ONE 13:e0203761.

Blauwblomme T, Dossi E, Pellegrino C, Goubert E, Gal Iglesias B, Sainte-Rose C, Rouach N, Nabbout R, Huberfeld G (2018) GABAergic transmission underlies interictal epileptogenicity in pediatric FCD. Ann Neurol.

Burke JN, Savell KE, Bunner KD (2018) CRISPR/dCas9-Mediated Upregulation of Reelin and Neuronal Excitability. Metamorphosis.

Capone C, Gigante G, Del Giudice P (2018) Spontaneous activity emerging from an inferred network model captures complex temporal dynamics of spiking data. arXiv

Chakrabarti S, Schwarz C (2018) Cortical modulation of sensory flow during active touch in the rat whisker system. Nat Commun 9:3907.

Chang YY, Gong XW, Gong HQ, Liang PJ, Zhang PM, Lu QC (2018) GABAA Receptor Activity Suppresses the Transition from Inter-ictal to Ictal Epileptiform Discharges in Juvenile Mouse Hippocampus. Neurosci Bull.

Chaudhuri AD, Dastgheyb RM, Yoo SW, Trout A, Talbot CC, Jr., Hao H, Witwer KW, Haughey NJ (2018) TNFalpha and IL-1beta modify the miRNA cargo of astrocyte shed extracellular vesicles to regulate neurotrophic signaling in neurons. Cell Death Dis 9:363.

Distasi C, Ruffinatti FA, Dionisi M, Antoniotti S, Gilardino A, Croci G, Riva B, Bassino E, Alberto G, Castroflorio E, Incarnato D, Morandi E, Martra G, Oliviero S, Munaron L, Lovisolo D (2018) SiO2 nanoparticles modulate the electrical activity of neuroendocrine cells without exerting genomic effects. Sci Rep 8:2760.

Dossi E, Blauwblomme T, Moulard J, Chever O, Vasile F, Guinard E, Le Bert M, Couillin I, Pallud J, Capelle L, Huberfeld G, Rouach N (2018) Pannexin-1 channels contribute to seizure generation in human epileptic brain tissue and in a mouse model of epilepsy. Sci Transl Med 10.

El Khoueiry C, Moretti D, Renom R, Camera F, Orlacchio R, Garenne A, Poulletier de Gannes F, Poque-Haro E, Lagroye I, Veyret B, Lewis N (2018) DECREASED SPONTANEOUS ELECTRICAL ACTIVITY IN NEURONAL NETWORKS EXPOSED TO RADIOFREQUENCY 1800 MHZ SIGNALS. J Neurophysiol.

Fan J, Thalody G, Kwagh J, Burnett E, Shi H, Lewen G, Chen SJ, Levesque P (2018) Assessing seizure liability using multi-electrode arrays (MEA). Toxicol In Vitro 55:93-100.

Frega M, Mossink B, Linda K, Keller J, Schubert D, Kasri NN (2018) Brain-on-a chip technologies for investigating neuronal diseases: Toward precision medicine applications. 2018 IEEE International Symposium on Circuits and Systems (ISCAS):1-3.

Frega M, Selten M, Mossink B, Keller JM, Linda K, Moerschen R, Qu J, Koerner P, Jansen S, Bijvank E, Oudakker A, Kleefstra T, van Bokhoven H, Zhou H, Schubert D, Nadif Kasri N (2018) Distinct pathogenic genes causing intellectual disability and autism exhibit overlapping effects on neuronal network development. bioRxiv.

Gaburro J, Bhatti A, Harper J, Jeanne I, Dearnley M, Green D, Nahavandi S, Paradkar PN, Duchemin JB (2018) Neurotropism and behavioral changes associated with Zika infection in the vector Aedes aegypti. Emerg Microbes Infect 7:68.

Gaburro J, Bhatti A, Sundaramoorthy V, Dearnley M, Green D, Nahavandi S, Paradkar PN, Duchemin JB (2018) Zika virus-induced hyper excitation precedes death of mouse primary neuron. Virol J 15:79.

Gamble JR, Zhang ET, Iyer N, Sakiyama-Elbert S, Barbour DL (2018) In Vitro Assay for the Detection of Network Connectivity in Embryonic Stem Cell-Derived Cultures. bioRxiv.

George JB, Abraham GM, Amrutur B, Sikdar SK (2018) Random Neuronal Networks show homeostatic regulation of global activity while showing persistent changes in specific connectivity paths to theta burst stimuli. Sci Rep 8:16568.

Georgescu EL, Georgescu IA, Zahiu CDM, Steopoaie AR, Morozan VP, Pana AS, Zagrean AM, Popa D (2018) Oscillatory Cortical Activity in an Animal Model of Dystonia Caused by Cerebellar Dysfunction. Front Cell Neurosci 12:390.

Joo S, Nam Y (2018) Slow-wave recordings from micro-sized neural clusters using multi-well type microelectrode arrays. IEEE Transactions on Biomedical Engineering:1-1.

Joo S, Song SY, Nam YS, Nam Y (2018) Stimuli-Responsive Neuronal Networking via Removable Alginate Masks. Advanced Biosystems 2:1800030.

Kilias A, Haussler U, Heining K, Froriep UP, Haas CA, Egert U (2018) Theta frequency decreases throughout the hippocampal formation in a focal epilepsy model. Hippocampus 28:375-391.

Kodama NX, Feng T, Ullett JJ, Chiel HJ, Sivakumar SS, Galan RF (2018) Anti-correlated cortical networks arise from spontaneous neuronal dynamics at slow timescales. Sci Rep 8:666.

Kuebler ES (2018) Harnessing the variability of neuronal activity School of Psychology, Faculty of Social Sciences PhD in Experimental Psychology.

le Feber J, Dummer A, Hassink GC, van Putten M, Hofmeijer J (2018) Evolution of Excitation-Inhibition Ratio in Cortical Cultures Exposed to Hypoxia. Front Cell Neurosci 12:183.

Makinen M (2018) Functionality of Brain in a Dish. Faculty of Medicine and Life Sciences.

Makinen ME, Yla-Outinen L, Narkilahti S (2018) GABA and Gap Junctions in the Development of Synchronized Activity in Human Pluripotent Stem Cell-Derived Neural Networks. Front Cell Neurosci 12:56.

Moskalyuk A, Kooy FR, Giugliano M (2018) Single-cell and neuronal network alterations in an in vitro model of Fragile X syndrome. bioRxiv.

Myers TL, Gonzalez OC, Stein JB, Bazhenov M (2018) Characterizing concentration-dependent neural dynamics of 4-aminopyridine-induced epileptiform activity. bioRxiv:252726.

Nelson AD, Caballero-Florán RN, Rodríguez Díaz JC, Li J, Chen KS, Walder KK, Bennett V, Lopez-Santiago LF, McInnis MG, Isom LL, Wang C, Zhang M, Jones KS, Jenkins PM (2018) Ankyrin-G Regulates Forebrain Connectivity and Network Synchronization via Interaction with GABARAP. bioRxiv:307512.

Nghiem TE, Tort-Colet N, Górski T, Ferrari U, Moghimyfiroozabad S, Goldman JS, Teleńczuk B, Capone C, Bal T, di Volo M, Destexhe A (2018) Two types of slow waves in anesthetized and sleeping brains. ArXiv 1810.00816.

Osinski BL, Kim A, Xiao W, Mehta NM, Kay LM (2018) Pharmacological manipulation of the olfactory bulb modulates beta oscillations: testing model predictions. J Neurophysiol 120:1090-1106.

Paavilainen T, Pelkonen A, Makinen ME, Peltola M, Huhtala H, Fayuk D, Narkilahti S (2018) Effect of prolonged differentiation on functional maturation of human pluripotent stem cell-derived neuronal cultures. Stem Cell Res 27:151-161.

Pastore VP, Massobrio P, Godjoski A, Martinoia S (2018) Identification of excitatory-inhibitory links and network topology in large-scale neuronal assemblies from multi-electrode recordings. PLoS Comput Biol 14:e1006381.

Piasetzky Y, Bisio M, Kanner S, Goldin M, Olivenboim M, Ben-Jacob E, Hanein Y, Chiappalone M, Barzilai A, Bonifazi P (2018) The emergence of dynamical instantaneous memory in the spontaneous activity of spatially confined neuronal assemblies in vitro. bioRxiv.

Plumbly W, Brandon NJ, Deeb TZ, Hall J, Harwood AJ (2018) L-type voltage-gated calcium channel regulation of in vitro human cortical neuronal networks BioRxiv.

Poli D, Massobrio P (2018) High-frequency electrical stimulation promotes reshaping of the functional connections and synaptic plasticity in in vitro cortical networks. Phys Biol 15:06LT01.

Rojas-Libano D, Wimmer Del Solar J, Aguilar-Rivera M, Montefusco-Siegmund R, Maldonado PE (2018) Local cortical activity of distant brain areas can phase-lock to the olfactory bulb's respiratory rhythm in the freely behaving rat. J Neurophysiol 120:960-972.

Saberi-Moghadam S, Simi A, Setareh H, Mikhail C, Tafti M (2018) In vitro Cortical Network Firing is Homeostatically Regulated: A Model for Sleep Regulation. Sci Rep 8:6297.

Sakuma R, Takahashi A, Nakano-Doi A, Sawada R, Kamachi S, Beppu M, Takagi T, Yoshimura S, Matsuyama T, Nakagomi T (2018) Comparative characterization of ischemia-induced brain multipotent stem cells with mesenchymal stem cells: Similarities and differences. Stem Cells Dev.

Sardi S, Vardi R, Goldental A, Sheinin A, Uzan H, Kanter I (2018) Adaptive nodes enrich nonlinear cooperative learning beyond traditional adaptation by links. Scientific Reports 8:5100.

Savell KE, Bach SV, Zipperly ME, Revanna JS, Goska NA, Tuscher JJ, Duke CG, Sultan FA, Burke JN, Williams DM, Ianov L, Day JJ (2018) A neuron-optimized CRISPR/dCas9 activation system for robust and specific gene regulation. bioRxiv.

Shi Y, Lin S, Staats KA, Li Y, Chang WH, Hung ST, Hendricks E, Linares GR, Wang Y, Son EY, Wen X, Kisler K, Wilkinson B, Menendez L, Sugawara T, Woolwine P, Huang M, Cowan MJ, Ge B, Koutsodendris N, Sandor KP, Komberg J, Vangoor VR, Senthilkumar K, Hennes V, Seah C, Nelson AR, Cheng TY, Lee SJ, August PR, Chen JA, Wisniewski N, Hanson-Smith V, Belgard TG, Zhang A, Coba M, Grunseich C, Ward ME, van den Berg LH, Pasterkamp RJ, Trotti D, Zlokovic BV, Ichida JK (2018) Haploinsufficiency leads to neurodegeneration in C9ORF72 ALS/FTD human induced motor neurons. Nat Med 24:313-325.

Studer F, Laghouati E, Jarre G, David O, Pouyatos B, Depaulis A (2018) Sensory coding is impaired in rat absence epilepsy. J Physiol.

Sun Y, Gao Y, Tidei JJ, Shen M, Hoang JT, Wagner D, Zhao X (2018) Loss of MeCP2 in immature neurons leads to impaired network integration. Hum Mol Genet.

Telezhkin V, Straccia M, Yarova P, Pardo M, Yung S, Vinh NN, Hancock JM, Barriga GG, Brown DA, Rosser AE, Brown JT, Canals JM, Randall AD, Allen ND, Kemp PJ (2018) Kv7 channels are upregulated during striatal neuron development and promote maturation of human iPSC-derived neurons. Pflugers Arch.

Teppola H, Okujeni S, Linne M-L, Egert U (2018) AMPA, NMDA and GABAA receptor mediated network burst dynamics in cortical cultures in vitro. arXiv.

Tisdale RK, Lesku JA, Beckers GJL, Rattenborg NC (2018) Bird-like propagating brain activity in anesthetized Nile crocodiles. Sleep.

Tourigny DS, Abdul Karim MK, Echeveste R, Kotter MRN, O'Neill JS (2018) Energetic substrate availability regulates synchronous activity in an excitatory neural network. bioRxiv:363671.

Tovar KR, Bridges DC, Wu B, Randall C, Audouard M, Jang J, Hansma PK, Kosik KS (2018) Action potential propagation recorded from single axonal arbors using multielectrode arrays. J Neurophysiol 120:306-320.

van der Meij J, Martinez-Gonzalez D, Beckers GJL, Rattenborg NC (2018) Intra-'cortical' activity during avian non-REM and REM sleep: variant and invariant traits between birds and mammals. Sleep.

van Lier B (2018) Analysis of Local Field Potentials in Organotypic Hippocampal Cultures of NMDA Receptor Subunit Knockout Mice.

Yoshida J, Saiki A, Soma S, Yamanaka K, Nonomura S, Rios A, Kawabata M, Kimura M, Sakai Y, Isomura Y (2018) Area-specific Modulation of Functional Cortical Activity During Block-based and Trial-based Proactive Inhibition. Neuroscience 388:297-316.

Aaser P, Knudsen M, Ramstad OH, van de Wijdeven R, Nichele S, Sandvig I, Tufte G, Bauer US, Halaas O, Hendseth S, Sandvig A, Valderhaug V (2017) Towards making a cyborg: A closed-loop reservoir-neuro system. In: ECAL 2017, pp 430-437. Lyon: MIT Press.

Akbarian B, Erfanian A (2017) Automatic Detection of PTZ-Induced Seizures Based on Functional Brain Connectivity Network in Rats 8th International IEEE EMBS Conference on Neural Engineering.

Alloisio S, Garbati P, Viti F, Dante S, Barbieri R, Arnaldi G, Petrelli A, Gigoni A, Giannoni P, Quarto R, Nobile M, Vassalli M, Pagano A (2017) Generation of a Functional Human Neural Network by NDM29 Overexpression in Neuroblastoma Cancer Cells. Molecular Neurobiology 54:6097-6106.

Bhinge A, Namboori SC, Zhang X, VanDongen AMJ, Stanton LW (2017) Genetic Correction of SOD1 Mutant iPSCs Reveals ERK and JNK Activated AP1 as a Driver of Neurodegeneration in Amyotrophic Lateral Sclerosis. Stem Cell Reports 8:856-869.

Bourke JL, Quigley AF, Duchi S, O'Connell CD, Crook JM, Wallace GG, Cook MJ, Kapsa RMI (2017) Three-dimensional neural cultures produce networks that mimic native brain activity. Journal of Tissue Engineering and Regenerative Medicine:n/a-n/a.

Castano-Prat P, Perez-Zabalza M, Perez-Mendez L, Escorihuela RM, Sanchez-Vives MV (2017) Slow and Fast Neocortical Oscillations in the Senescence-Accelerated Mouse Model SAMP8. Frontiers in Aging Neuroscience 9.

Chan SC, Mok SY, Ng DW, Goh SY (2017) The role of neuron-glia interactions in the emergence of ultra-slow oscillations. Biol Cybern 111:459-472.

Chang M, Dian JA, Dufour S, Wang L, Moradi-Chameh H, Ramani M, Zhang L, Carlen PL, Womelsdorf T, Valiante TA (2017) Brief activation of GABAergic interneurons initiates the transition to ictal events through post-inhibitory rebound excitation. Neurobiol Dis.

Dauth S, Maoz BM, Sheehy SP, Hemphill MA, Murty T, Macedonia MK, Greer AM, Budnik B, Parker KK (2017) Neurons derived from different brain regions are inherently different in vitro: a novel multiregional brain-on-a-chip. J Neurophysiol 117:1320-1341.

Dawitz J, Hjorth JJ, Kroon T, Ruiperez-Alonso M, Chandrasekhar N, Hartung H, Hanganu-Opatz I, Mansvelder H, Meredith R (2017) Transient Network Synchrony Of The Developing Medial Entorhinal Cortex. bioRxiv.

Fedorovich S, Hofmeijer J, van Putten MJ, le Feber J (2017) Reduced Synaptic Vesicle Recycling during Hypoxia in Cultured Cortical Neurons. Front Cell Neurosci 11:32.

Fleischer W, Theiss S, Schnitzler A, Sergeeva O (2017) Glutamine triggers long-lasting increase in striatal network activity in vitro. Experimental Neurology 290:41-52.

Gazina EV, Morrisroe E, Mendis GDC, Michalska AE, Chen J, Nefzger CM, Rollo BN, Reid CA, Pera MF, Petrou S (2017) Method of derivation and differentiation of mouse embryonic stem cells generating synchronous neuronal networks. J Neurosci Methods.

Gertz ML, Baker Z, Jose S, Peixoto N (2017) Time-dependent Increase in the Network Response to the Stimulation of Neuronal Cell Cultures on Micro-electrode Arrays.e55726.

Gladkov A, Pigareva Y, Kutyina D, Kolpakov V, Bukatin A, Mukhina I, Kazantsev V, Pimashkin A (2017) Design of Cultured Neuron Networks in vitro with Predefined Connectivity Using Asymmetric Microfluidic Channels. Sci Rep 7:15625.

Gladkov AA, Kolpakov VN, Pigareva YI, Kazantsev V, Mukhina IV, Pimashkin A (2017) Functional Connectivity of Neural Network in Dissociated Hippocampal Culture Grown on Microelectrode Array.

Habibey R, Latifi S, Mousavi H, Pesce M, Arab-Tehrany E, Blau A (2017) A multielectrode array microchannel platform reveals both transient and slow changes in axonal conduction velocity. Sci Rep 7:8558.

Henningson M, Illes S (2017) Analysis and Modeling of Subthreshold Neural Multi-Electrode Array Data by Statistical Field Theory. Front Comput Neurosci 11.

Jung H, Kang H, Nam Y (2017) Digital micromirror based near-infrared illumination system for plasmonic photothermal neuromodulation. Biomedical Optics Express 8:2866-2878.

Khateb M, Schiller J, Schiller Y (2017) Feedforward motor information enhances somatosensory responses and sharpens angular tuning of rat S1 barrel cortex neurons. Elife 6.

Kim HB, Swanberg KM, Han HS, Kim JC, Kim JW, Lee S, Lee CJ, Maeng S, Kim TS, Park JH (2017) Prolonged stimulation with low-intensity ultrasound induces delayed increases in spontaneous hippocampal culture spiking activity. J Neurosci Res 95:885-896.

Kirischuk S, Sinning A, Blanquie O, Yang JW, Luhmann HJ, Kilb W (2017) Modulation of Neocortical Development by Early Neuronal Activity: Physiology and Pathophysiology. Front Cell Neurosci 11:379.

Kohler T, Wolfel M, Ciba M, Bochtler U, Thielemann C (2017) Terrestrial Trunked Radio (TETRA) exposure of neuronal in vitro networks. Environ Res 162:1-7.

Kumar SS (2017) A Paradigm for Autonomous Targeted Interaction with Biological Neuronal Networks. Dept. of Microsystems Engineering PhD.

le Feber J, Erkamp N, van Putten M, Hofmeijer J (2017) Loss and recovery of functional connectivity in cultured cortical networks exposed to hypoxia. J Neurophysiol 118:394-403.

Li Y, Chen X, Dzakpasu R, Conant K (2017) Dopamine-dependent effects on basal and glutamate stimulated network dynamics in cultured hippocampal neurons. J Neurochem 140:550-560.

Liu B-W, Mao J-W, Shi Y-J, Lu Q-C, Liang P-J, Zhang P-M (2017) Dynamics in the neural network of an in vitro epilepsy model. International Journal of Data Mining and Bioinformatics 18:125-143.

Liu H, Bridges D, Randall C, Solla SA, Wu B, Hansma P, Yan X, Kosik K, Bouchard K (2017) Use of a Neural Circuit Probe to Validate in silico Predictions of Inhibitory Connections. BioRxiv.

Mack CM, Hall DR, Herr DW, Shafer TJ (2017) Low and High-Frequency Field Potentials in Cortical Networks Exhibit Distinct Responses to Chemicals. The FASEB Journal 31:861.814.

Mendis GDC (2017) Detection of Phenotypic Network Signatures in Cultured Neuronal Networks. Department of Mechanical Engineering.

Miceli S (2017) Modulation of Barrel Cortex Microcircuitry by Serotonin. Department for Cognitive Neuroscience PhD.

Narula U, Ruiz A, McQuaide M, DeMarse TB, Wheeler BC, Brewer GJ (2017) Narrow microtunnel technology for the isolation and precise identification of axonal communication among distinct hippocampal subregion networks. PLoS ONE 12:e0176868.

Okujeni S, Kandler S, Egert U (2017) Mesoscale architecture shapes initiation and richness of spontaneous network activity. J Neurosci.

Orenstein O, Keren H (2017) Development of Cortical Networks under Continuous Stimulation. Front Mol Neurosci 10:18.

Pasquale V, Martinoia S, Chiappalone M (2017) Stimulation triggers endogenous activity patterns in cultured cortical networks. Sci Rep 7:9080.

Pastore VP, Godjoski A, Martinoia S, Massobrio P (2017) SPICODYN: A Toolbox for the Analysis of Neuronal Network Dynamics and Connectivity from Multi-Site Spike Signal Recordings. Neuroinformatics.

Pistollato F, Canovas-Jorda D, Zagoura D, Bal-Price A (2017) Nrf2 pathway activation upon rotenone treatment in human iPSC-derived neural stem cells undergoing differentiation towards neurons and astrocytes. Neurochem Int 108:457-471.

Rodriguez A, O'Neill K, Swiatkowski P, Patel MV, Firestein BL (2017) Overexpression of cypin alters dendrite morphology, single neuron activity, and network properties via distinct mechanisms. J Neural Eng.

Russo I, Gavello D, Menna E, Vandael D, Veglia C, Morello N, Corradini I, Focchi E, Alfieri A, Angelini C, Bianchi FT, Morellato A, Marcantoni A, Sassoe-Pognetto M, Ottaviani MM, Yekhlef L, Giustetto M, Taverna S, Carabelli V, Matteoli M, Carbone E, Turco E, Defilippi P (2017) p140Cap Regulates GABAergic Synaptogenesis and Development of Hippocampal Inhibitory Circuits. Cereb Cortex:1-15.

Sardi S, Vardi R, Sheinin A, Goldental A, Kanter I (2017) New Types of Experiments Reveal that a Neuron Functions as Multiple Independent Threshold Units. Sci Rep 7:18036.

Satuvuori E, Mulansky M, Bozanic N, Malvestio I, Zeldenrust F, Lenk K, Kreuz T (2017) Measures of spike train synchrony for data with multiple time scales. J Neurosci Methods 287:25-38.

Scarsi F, Tessadori J, Chiappalone M, Pasquale V (2017) Investigating the impact of electrical stimulation temporal distribution on cortical network responses. BMC Neurosci 18:49.

Seidel D, Jahnke H-G, Englich B, Girard M, Robitzki AA (2017) In vitro field potential monitoring on a multi-microelectrode array for the electrophysiological long-term screening of neural stem cell maturation. Analyst 142:1929-1937.

Shtrahman E, Maruyama D, Olariu E, Fink CG, Zochowski M (2017) Understanding spatial and temporal patterning of astrocyte calcium transients via interactions between network transport and extracellular diffusion. Phys Biol 14:016001.

Tanriöver G (2017) Effects of amyloid-beta (Aβ) on homeostatic network plasticity in human iPSC-derived neuronal networks. Pharmazie.

Toivanen M, Pelkonen A, Makinen M, Yla-Outinen L, Sukki L, Kallio P, Ristola M, Narkilahti S (2017) Optimised PDMS Tunnel Devices on MEAs Increase the Probability of Detecting Electrical Activity from Human Stem Cell-Derived Neuronal Networks. Front Neurosci 11:606.

Tovar KR, Bridges DC, Wu B, Randall C, Audouard M, Jang J, Hansma PK, Kosik KS (2017) Recording action potential propagation in single axons using multi-electrode arrays. bioRxiv.

Ugbode CI, Smith I, Whalley BJ, Hirst WD, Rattray M (2017) Sonic hedgehog signalling mediates astrocyte crosstalk with neurons to confer neuroprotection. J Neurochem 142:429-443.

Vardi R, Goldental A, Sheinin A, Sardi S, Kanter I (2017) Fast reversible learning based on neurons functioning as anisotropic multiplex hubs. EPL (Europhysics Letters) 118:46002.

Vassallo A, Chiappalone M, De Camargos Lopes R, Scelfo B, Novellino A, Defranchi E, Palosaari T, Weisschu T, Ramirez T, Martinoia S, Johnstone AFM, Mack CM, Landsiedel R, Whelan M, Bal-Price A, Shafer TJ (2017) A multi-laboratory evaluation of microelectrode array-based measurements of neural network activity for acute neurotoxicity testing. Neurotoxicology 60:280-292.

Wibral M, Finn C, Wollstadt P, Lizier J, Priesemann V (2017) Quantifying Information Modification in Developing Neural Networks via Partial Information Decomposition. Entropy 19:494.

Xiao D, Vanni MP, Mitelut CC, Chan AW, LeDue JM, Xie Y, Chen AC, Swindale NV, Murphy TH (2017) Mapping cortical mesoscopic networks of single spiking cortical or sub-cortical neurons. Elife 6.

Ahn S, Jun SB, Lee HW, Lee S (2016) Computational modeling of epileptiform activities in medial temporal lobe epilepsy combined with in vitro experiments. J Comput Neurosci 41:207-223.

Alagapan S, Franca E, Pan L, Leondopulos S, Wheeler BC, DeMarse TB (2016) Structure, Function, and Propagation of Information across Living Two, Four, and Eight Node Degree Topologies. Front Bioeng Biotechnol 4:15.

Alegre-Cortes J, Soto-Sanchez C, Piza AG, Albarracin AL, Farfan FD, Felice CJ, Fernandez E (2016) Time-frequency analysis of neuronal populations with instantaneous resolution based on noise-assisted multivariate empirical mode decomposition. J Neurosci Methods 267:35-44.

Baranauskas G, Svirskis G, Tkatch T (2016) Spatial synchronization of visual stimulus-evoked gamma frequency oscillations in the rat superior colliculus. Neuroreport 27:203-208.

Bart Martens M, Frega M, Classen J, Epping L, Bijvank E, Benevento M, van Bokhoven H, Tiesinga P, Schubert D, Nadif Kasri N (2016) Euchromatin histone methyltransferase 1 regulates cortical neuronal network development. Sci Rep 6:35756.

Barykina NV, Subach OM, Doronin DA, Sotskov VP, Roshchina MA, Kunitsyna TA, Malyshev AY, Smirnov IV, Azieva AM, Sokolov IS, Piatkevich KD, Burtsev MS, Varizhuk AM, Pozmogova GE, Anokhin KV, Subach FV, Enikolopov GN (2016) A new design for a green calcium indicator with a smaller size and a reduced number of calcium-binding sites. Sci Rep 6:34447.

Blanquie O, Liebmann L, Hubner CA, Luhmann HJ, Sinning A (2016) NKCC1-Mediated GABAergic Signaling Promotes Postnatal Cell Death in Neocortical Cajal-Retzius Cells. Cereb Cortex.

Channappa L (2016) Electrical Imaging of Aberrant Activity in Neural Tissues Using High Density Microelectrode Arrays Medizinischen Fakultät.

Chever O, Dossi E, Pannasch U, Derangeon M, Rouach N (2016) Astroglial networks promote neuronal coordination. Sci Signal 9:ra6.

Colombi I, Tinarelli F, Pasquale V, Tucci V, Chiappalone M (2016) A Simplified In vitro Experimental Model Encompasses the Essential Features of Sleep. Front Neurosci 10:315.

Cotterill E, Charlesworth P, Thomas CW, Paulsen O, Eglen SJ (2016) A comparison of computational methods for detecting bursts in neuronal spike trains and their application to human stem cell-derived neuronal networks. J Neurophysiol 116:306-321.

Dvorkin R, Ziv NE (2016) Relative Contributions of Specific Activity Histories and Spontaneous Processes to Size Remodeling of Glutamatergic Synapses. PLoS Biol 14:e1002572.

Flachs D, Ciba M (2016) Cell-based sensor chip for neurotoxicity measurements in drinking water. LékaĜ a technika 46:46-50.

Frega M (2016) Neuronal Network Dynamics in 2D and 3D in vitro Neuroengineered Systems. PhD.

Hartung H, Brockmann MD, Poschel B, De Feo V, Hanganu-Opatz IL (2016) Thalamic and Entorhinal Network Activity Differently Modulates the Functional Development of Prefrontal-Hippocampal Interactions. J Neurosci 36:3676-3690.

Huang Y, Chang Y, Chen C, Lai P, Chan CK (2016) Positive Feedback and Synchronized Bursts in Neuronal

Cultures. In: arXiv.

Kapucu FE, Makinen ME, Tanskanen JM, Yla-Outinen L, Narkilahti S, Hyttinen JA (2016) Joint analysis of extracellular spike waveforms and neuronal network bursts. J Neurosci Methods 259:143-155.

Kapucu FE, Valkki I, Mikkonen JE, Leone C, Lenk K, Tanskanen JM, Hyttinen JA (2016) Spectral Entropy Based Neuronal Network Synchronization Analysis Based on Microelectrode Array Measurements. Front Comput Neurosci 10:112.

Keren H, Marom S (2016) Long-range synchrony and emergence of neural reentry. Sci Rep 6:36837.

Klaus A, Plenz D (2016) A Low-Correlation Resting State of the Striatum during Cortical Avalanches and Its Role in Movement Suppression. PLoS Biol 14:e1002582.

Latifi S, Tamayol A, Habibey R, Sabzevari R, Kahn C, Geny D, Eftekharpour E, Annabi N, Blau A, Linder M, Arab-Tehrany E (2016) Natural lecithin promotes neural network complexity and activity. Sci Rep 6:25777.

Lenk K, Priwitzer B, Yla-Outinen L, Tietz LH, Narkilahti S, Hyttinen JA (2016) Simulation of developing human neuronal cell networks. Biomed Eng Online 15:105.

Mahmud M, Vassanelli S (2016) Processing and Analysis of Multichannel Extracellular Neuronal Signals: State-of-the-Art and Challenges. Front Neurosci 10:248.

Marks WN, Cavanagh ME, Greba Q, Cain SM, Snutch TP, Howland JG (2016) The Genetic Absence Epilepsy Rats from Strasbourg model of absence epilepsy exhibits alterations in fear conditioning and latent inhibition consistent with psychiatric comorbidities in humans. Eur J Neurosci 43:25-40.

Martens MB, Frega M, Classen J, Epping L, Bijvank E, Benevento M, van Bokhoven H, Tiesinga P, Schubert D, Nadif Kasri N (2016) Euchromatin histone methyltransferase 1 regulates cortical neuronal network development. Sci Rep 6:35756.

Mordel J, Sheikh A, Tsohataridis S, Kanold PO, Zehendner CM, Luhmann HJ (2016) Mild systemic inflammation and moderate hypoxia transiently alter neuronal excitability in mouse somatosensory cortex. Neurobiol Dis 88:29-43.

Pastore VP, Poli D, Godjoski A, Martinoia S, Massobrio P (2016) ToolConnect: A Functional Connectivity Toolbox for In vitro Networks. Front Neuroinform 10:13.

Perez-Alcazar M, Culley G, Lyckenvik T, Mobarrez K, Bjorefeldt A, Wasling P, Seth H, Asztely F, Harrer A, Iglseder B, Aigner L, Hanse E, Illes S (2016) Human Cerebrospinal Fluid Promotes Neuronal Viability and Activity of Hippocampal Neuronal Circuits In Vitro. Front Cell Neurosci 10:54.

Poon VY, Gu M, Ji F, VanDongen AM, Fivaz M (2016) miR-27b shapes the presynaptic transcriptome and influences neurotransmission by silencing the polycomb group protein Bmi1. BMC Genomics 17:777.

Roza C, Mazo I, Rivera-Arconada I, Cisneros E, Alayon I, Lopez-Garcia JA (2016) Analysis of spontaneous activity of superficial dorsal horn neurons in vitro: neuropathy-induced changes. Pflugers Arch 468:2017-2030.

Rubio A, Luoni M, Giannelli SG, Radice I, Iannielli A, Cancellieri C, Di Berardino C, Regalia G, Lazzari G, Menegon A, Taverna S, Broccoli V (2016) Rapid and efficient CRISPR/Cas9 gene inactivation in human neurons during human pluripotent stem cell differentiation and direct reprogramming. Sci Rep 6:37540.

Sabitha KR, Sanjay D, Savita B, Raju TR, Laxmi TR (2016) Electrophysiological characterization of Nsc-34 cell line using Microelectrode Array. J Neurol Sci 370:134-139.

Sardi S, Goldental A, Amir H, Vardi R, Kanter I (2016) Vitality of Neural Networks under Reoccurring Catastrophic Failures. Sci Rep 6:31674.

Serafini R, Dettloff S, Loeb JA (2016) Neocortical slices from adult chronic epileptic rats exhibit discharges of higher voltages and broader spread. Neuroscience 322:509-524.

Shaukat A, Thivierge JP (2016) Statistical Evaluation of Waveform Collapse Reveals Scale-Free Properties of Neuronal Avalanches. Front Comput Neurosci 10:29.

Shein-Idelson M, Cohen G, Ben-Jacob E, Hanein Y (2016) Modularity Induced Gating and Delays in Neuronal Networks. PLoS Comput Biol 12:e1004883.

Spacek MA, Swindale NV (2016) Cortical state and natural movie responses in cat visual cortex. bioRxiv:031765.

Suresh J, Radojicic M, Pesce LL, Bhansali A, Wang J, Tryba AK, Marks JD, van Drongelen W (2016) Network burst activity in hippocampal neuronal cultures: the role of synaptic and intrinsic currents. J Neurophysiol 115:3073-3089.

Timme NM, Marshall NJ, Bennett N, Ripp M, Lautzenhiser E, Beggs JM (2016) Criticality Maximizes Complexity in Neural Tissue. Front Physiol 7:425.

Vardi R, Goldental A, Sardi S, Sheinin A, Kanter I (2016) Simultaneous multi-patch-clamp and extracellular-array recordings: Single neuron reflects network activity. Sci Rep 6:36228.

Afshar G, El Hady A, Geisel T, Stuehmer W, Wolf F (2015) Enhancing burst activation and propagation in cultured neuronal networks by photo-stimulation. bioRxiv.

Alfonsa H, Merricks EM, Codadu NK, Cunningham MO, Deisseroth K, Racca C, Trevelyan AJ (2015) The contribution of raised intraneuronal chloride to epileptic network activity. J Neurosci 35:7715-7726.

Charlesworth P, Cotterill E, Morton A, Grant SG, Eglen SJ (2015) Quantitative differences in developmental profiles of spontaneous activity in cortical and hippocampal cultures. Neural Dev 10:1.

Charlesworth P, Morton A, Eglen SJ, Komiyama NH, Grant SG (2015) Canalization of genetic and pharmacological perturbations in developing primary neuronal activity patterns. Neuropharmacology 100:47-55.

Dranias MR, Westover MB, Cash S, VanDongen AM (2015) Stimulus information stored in lasting active and hidden network states is destroyed by network bursts. Front Integr Neurosci 9:14.

Eisenman LN, Emnett CM, Mohan J, Zorumski CF, Mennerick S (2015) Quantification of bursting and synchrony in cultured hippocampal neurons. J Neurophysiol 114:1059-1071.

Fleischer W, Theiss S, Slotta J, Holland C, Schnitzler A (2015) High-frequency voltage oscillations in cultured astrocytes. Physiol Rep 3.

Fong MF, Newman JP, Potter SM, Wenner P (2015) Upward synaptic scaling is dependent on neurotransmission rather than spiking. Nat Commun 6:6339.

Garcia-Munoz M, Taillefer E, Pnini R, Vickers C, Miller J, Arbuthnott GW (2015) Rebuilding a realistic corticostriatal "social network" from dissociated cells. Front Syst Neurosci 9:63.

Goldental A, Sabo P, Sardi S, Vardi R, Kanter I (2015) Mimicking Collective Firing Patterns of Hundreds of Connected Neurons using a Single-Neuron Experiment. Front Neurosci 9:508.

Goldental A, Vardi R, Sardi S, Sabo P, Kanter I (2015) Broadband macroscopic cortical oscillations emerge from intrinsic neuronal response failures. Front Neural Circuits 9:65.

Grosser S (2015) Modulating Hippocampal Output in the Pilocarpine Model of Epilepsy by beta-adrenoceptor Activation. Lebenswissenschaftlichen Fakultät Dr. rer. nat.

Grosser S, Hollnagel JO, Gilling KE, Bartsch JC, Heinemann U, Behr J (2015) Gating of hippocampal output by beta-adrenergic receptor activation in the pilocarpine model of epilepsy. Neuroscience 286:325-337.

Hamilton F, Graham R, Luu L, Peixoto N (2015) Time-Dependent Increase in Network Response to Stimulation. PLoS ONE 10:e0142399.

Haroush N, Marom S (2015) Slow dynamics in features of synchronized neural network responses. Front Comput Neurosci 9:40.

Hsiao MC, Yu PN, Song D, Liu CY, Heck CN, Millett D, Berger TW (2015) An in vitro seizure model from human hippocampal slices using multi-electrode arrays. J Neurosci Methods 244:154-163.

Ju H, Dranias MR, Banumurthy G, VanDongen AM (2015) Spatiotemporal memory is an intrinsic property of networks of dissociated cortical neurons. J Neurosci 35:4040-4051.

Kanner S, Bisio M, Cohen G, Goldin M, Tedesco M, Hanein Y, Ben-Jacob E, Barzilai A, Chiappalone M, Bonifazi P (2015) Design, Surface Treatment, Cellular Plating, and Culturing of Modular Neuronal Networks Composed of Functionally Inter-connected Circuits.e52572.

Krishnan GP, Filatov G, Shilnikov A, Bazhenov M (2015) Electrogenic properties of the Na+/K+ ATPase controls transitions between normal and pathological brain states. J Neurophysiol:jn 00460 02014.

Kuebler ES, Tauskela JS, Aylsworth A, Zhao X, Thivierge JP (2015) Burst predicting neurons survive an in vitro glutamate injury model of cerebral ischemia. Sci Rep 5:17718.

Kummer KK, El Rawas R, Kress M, Saria A, Zernig G (2015) Social Interaction and Cocaine Conditioning in Mice Increase Spontaneous Spike Frequency in the Nucleus Accumbens or Septal Nuclei as Revealed by Multielectrode Array Recordings. Pharmacology 95:42-49.

Ledochowitsch P, Yazdan-Shahmorad A, Bouchard KE, Diaz-Botia C, Hanson TL, He JW, Seybold BA, Olivero E, Phillips EA, Blanche TJ, Schreiner CE, Hasenstaub A, Chang EF, Sabes PN, Maharbiz MM (2015) Strategies for optical control and simultaneous electrical readout of extended cortical circuits. J Neurosci Methods 256:220-231.

Li Y, Sun R, Zhang B, Wang Y, Li H (2015) Application of hierarchical dissociated neural network in closed-loop hybrid system integrating biological and mechanical intelligence. PLoS ONE 10:e0127452.

Lu C, Chen Q, Zhou T, Bozic D, Fu Z, Pan JQ, Feng G (2015) Micro-electrode array recordings reveal reductions in both excitation and inhibition in cultured cortical neuron networks lacking Shank3. Mol Psychiatry.

Luk CC, Lee AJ, Wijdenes P, Zaidi W, Leung A, Wong NY, Andrews J, Syed NI (2015) Trophic factor-induced activity 'signature' regulates the functional expression of postsynaptic excitatory acetylcholine receptors required for synaptogenesis. Sci Rep 5:9523.

Mari JF, Saito JH, Neves AF, Lotufo CM, Destro-Filho JB, Nicoletti Mdo C (2015) Quantitative Analysis of Rat Dorsal Root Ganglion Neurons Cultured on Microelectrode Arrays Based on Fluorescence Microscopy Image Processing. Int J Neural Syst 25:1550033.

Masi E, Ciszak M, Santopolo L, Frascella A, Giovannetti L, Marchi E, Viti C, Mancuso S (2015) Electrical spiking in bacterial biofilms. J R Soc Interface 12:20141036.

Moore ME, Loft JM, Clegern WC, Wisor JP (2015) Manipulating neuronal activity in the mouse brain with ultrasound: A comparison with optogenetic activation of the cerebral cortex. Neurosci Lett 604:183-187.

Ness TV, Chintaluri C, Potworowski J, Leski S, Glabska H, Wojcik DK, Einevoll GT (2015) Modelling and Analysis of Electrical Potentials Recorded in Microelectrode Arrays (MEAs). Neuroinformatics 13:403-426.

Newman JP, Fong MF, Millard DC, Whitmire CJ, Stanley GB, Potter SM (2015) Optogenetic feedback control of neural activity. Elife 4:e07192.

Pirino V, Riccomagno E, Martinoia S, Massobrio P (2015) A topological study of repetitive co-activation networks in in vitro cortical assemblies. Phys Biol 12:016007.

Schroeter MS, Charlesworth P, Kitzbichler MG, Paulsen O, Bullmore ET (2015) Emergence of rich-club topology and coordinated dynamics in development of hippocampal functional networks in vitro. J Neurosci 35:5459-5470.

Sellers KK, Bennett DV, Hutt A, Williams JH, Frohlich F (2015) Awake vs. anesthetized: layer-specific sensory processing in visual cortex and functional connectivity between cortical areas. J Neurophysiol 113:3798-3815.

Serafini R, Andrade R, Loeb JA (2015) Coalescence of deep and superficial epileptic foci into larger discharge units in adult rat neocortex. Neuroscience 292:148-158.

Slomowitz E, Styr B, Vertkin I, Milshtein-Parush H, Nelken I, Slutsky M, Slutsky I (2015) Interplay between population firing stability and single neuron dynamics in hippocampal networks. Elife 4.

Smith I, Silveirinha V, Stein JL, de la Torre-Ubieta L, Farrimond JA, Williamson EM, Whalley BJ (2015) Human neural stem cell-derived cultures in three-dimensional substrates form spontaneously functional neuronal networks. J Tissue Eng Regen Med.

Tedesco M, Frega M, Martinoia S, Pesce M, Massobrio P (2015) Interfacing 3D Engineered Neuronal Cultures to Micro-Electrode Arrays: An Innovative In Vitro Experimental Model. J Vis Exp:e53080.

Tendler A, Wagner S (2015) Different types of theta rhythmicity are induced by social and fearful stimuli in a network associated with social memory. Elife 4.

Tessadori J, Chiappalone M (2015) Closed-loop Neuro-robotic Experiments to Test Computational Properties of Neuronal Networks.e52341.

Vardi R, Goldental A, Marmari H, Brama H, Stern EA, Sardi S, Sabo P, Kanter I (2015) Neuronal Response Impedance Mechanism Implementing Cooperative Networks with Low Firing Rates and Microsecond Precision. Frontiers in Neural Circuits 9.

Bisio M, Bosca A, Pasquale V, Berdondini L, Chiappalone M (2014) Emergence of bursting activity in connected neuronal sub-populations. PLoS ONE 9:e107400.

Cid E, Gomez-Dominguez D, Martin-Lopez D, Gal B, Laurent F, Ibarz JM, Francis F, Menendez de la Prida L (2014) Dampened hippocampal oscillations and enhanced spindle activity in an asymptomatic model of developmental cortical malformations. Front Syst Neurosci 8:50.

Dossi E, Blauwblomme T, Nabbout R, Huberfeld G, Rouach N (2014) Multi-electrode Array Recordings of Human Epileptic Postoperative Cortical Tissue. J Vis Exp.

Frega M, Tedesco M, Massobrio P, Pesce M, Martinoia S (2014) Network dynamics of 3D engineered neuronal cultures: a new experimental model for in-vitro electrophysiology. Sci Rep 4:5489.

George JB, Abraham GM, Singh K, Ankolekar SM, Amrutur B, Sikdar SK (2014) Input coding for neuro-electronic hybrid systems. Biosystems 126C:1-11.

Goldental A, Guberman S, Vardi R, Kanter I (2014) A computational paradigm for dynamic logic-gates in neuronal activity. Front Comput Neurosci 8:52.

Gong XW, Li JB, Lu QC, Liang PJ, Zhang PM (2014) Effective connectivity of hippocampal neural network and its alteration in Mg2+-free epilepsy model. PLoS ONE 9:e92961.

Grosser S, Queenan BN, Lalchandani RR, Vicini S (2014) Hilar Somatostatin Interneurons Contribute to Synchronized GABA Activity in an In Vitro Epilepsy Model. PLoS ONE 9:e86250.

Gullo F, Amadeo A, Donvito G, Lecchi M, Costa B, Constanti A, Wanke E (2014) Atypical "seizure-like" activity in cortical reverberating networks in vitro can be caused by LPS-induced inflammation: a multi-electrode array study from a hundred neurons. Front Cell Neurosci 8:361.

Gullo F, Manfredi I, Lecchi M, Casari G, Wanke E, Becchetti A (2014) Multi-electrode array study of neuronal cultures expressing nicotinic beta2-V287L subunits, linked to autosomal dominant nocturnal frontal lobe epilepsy. An in vitro model of spontaneous epilepsy. Front Neural Circuits 8:87.

Hagar M, Roni V, Ido K (2014) Chaotic and non-chaotic phases in experimental responses of a single neuron. EPL (Europhysics Letters) 106:46002.

Hammad M, Schmidt SL, Zhang X, Bray R, Frohlich F, Ghashghaei HT (2014) Transplantation of GABAergic Interneurons into the Neonatal Primary Visual Cortex Reduces Absence Seizures in Stargazer Mice. Cereb Cortex.

Hedrich UB, Liautard C, Kirschenbaum D, Pofahl M, Lavigne J, Liu Y, Theiss S, Slotta J, Escayg A, Dihne M, Beck H, Mantegazza M, Lerche H (2014) Impaired Action Potential Initiation in GABAergic Interneurons Causes Hyperexcitable Networks in an Epileptic Mouse Model Carrying a Human NaV1.1 Mutation. J Neurosci 34:14874-14889.

Illes S, Jakab M, Beyer F, Gelfert R, Couillard-Despres S, Schnitzler A, Ritter M, Aigner L (2014) Intrinsically active and pacemaker neurons in pluripotent stem cell-derived neuronal populations. Stem Cell Reports 2:323-336.

Imbrosci B, Neitz A, Mittmann T (2014) Focal cortical lesions induce bidirectional changes in the excitability of fast spiking and non fast spiking cortical interneurons. PLoS ONE 9:e111105.

Keren H, Marom S (2014) Controlling neural network responsiveness: tradeoffs and constraints. Front Neuroeng 7:11.

Korotchenko S, Cingolani LA, Kuznetsova T, Bologna LL, Chiappalone M, Dityatev A (2014) Modulation of network activity and induction of homeostatic synaptic plasticity by enzymatic removal of heparan sulfates. Philos Trans R Soc Lond B Biol Sci 369:20140134.

le Feber J, Stoyanova, II, Chiappalone M (2014) Connectivity, excitability and activity patterns in neuronal networks. Phys Biol 11:036005.

Martens MB, Chiappalone M, Schubert D, Tiesinga PH (2014) Separating burst from background spikes in multichannel neuronal recordings using return map analysis. Int J Neural Syst 24:1450012.

Napoli A, Xie J, Obeid I (2014) Understanding the temporal evolution of neuronal connectivity in cultured networks using statistical analysis. BMC Neurosci 15:17.

Nieto-Posadas A, Flores-Martínez E, Lorea-Hernández J-J, Rivera-Angulo A-J, Pérez-Ortega J-E, Bargas J, Peña-Ortega F (2014) Change in network connectivity during fictive-gasping generation in hypoxia: prevention by a metabolic intermediate. Frontiers in Physiology 5.

Petit LF, Jalabert M, Buhler E, Malvache A, Peret A, Chauvin Y, Watrin F, Represa A, Manent JB (2014) Normotopic cortex is the major contributor to epilepsy in experimental double cortex. Ann Neurol 76:428-442.

Reyes-Puerta V, Sun JJ, Kim S, Kilb W, Luhmann HJ (2014) Laminar and Columnar Structure of Sensory-Evoked Multineuronal Spike Sequences in Adult Rat Barrel Cortex In Vivo. Cereb Cortex.

Shi YJ, Gong XW, Gong HQ, Liang PJ, Zhang PM, Lu QC (2014) Effect of the entorhinal cortex on ictal discharges in low-Mg(2)(+)-induced epileptic hippocampal slice models. Neural Plast 2014:205912.

Stone T, Khawaja U, Perko N, Kiehl TR, Bergeron C (2014) Best practices for avoiding dominant experimental bias in analysis of multielectrode array signals. The Twenty Third Annual Computational Neuroscience Meeting.

Stoyanova, II, le Feber J (2014) Ghrelin accelerates synapse formation and activity development in cultured cortical networks. BMC Neurosci 15:49.

Tkacik G, Marre O, Amodei D, Schneidman E, Bialek W, Berry MJ, 2nd (2014) Searching for collective behavior in a large network of sensory neurons. PLoS Comput Biol 10:e1003408.

Vardi R, Marmari H, Kanter I (2014) Error correction and fast detectors implemented by ultrafast neuronal plasticity. Phys Rev E 89.

Weir K, Blanquie O, Kilb W, Luhmann HJ, Sinning A (2014) Comparison of spike parameters from optically identified GABAergic and glutamatergic neurons in sparse cortical cultures. Front Cell Neurosci 8:460.

Wu JJ, Chang WP, Shih HC, Yen CT, Shyu BC (2014) Cingulate seizure-like activity reveals neuronal avalanche regulated by network excitability and thalamic inputs. BMC Neurosci 15:3.

Xie Y, Heida T, Stegenga J, Zhao Y, Moser A, Tronnier V, Feuerstein TJ, Hofmann UG (2014) High-frequency electrical stimulation suppresses cholinergic accumbens interneurons in acute rat brain slices through GABA(B) receptors. Eur J Neurosci 40:3653-3662.

Zwart R, Sher E, Ping X, Jin X, Sims JR, Chappell AS, Gleason SD, Hahn PJ, Gardinier K, Gernert DL, Hobbs J, Smith JL, Valli SN, Witkin JM (2014) Perampanel, an Antagonist of α-Amino-3-Hydroxy-5-Methyl-4-Isoxazolepropionic Acid Receptors, for the Treatment of Epilepsy: Studies in Human Epileptic Brain and Nonepileptic Brain and in Rodent Models. Journal of Pharmacology and Experimental Therapeutics 351:124-133.

Biffi E, Regalia G, Menegon A, Ferrigno G, Pedrocchi A (2013) The influence of neuronal density and maturation on network activity of hippocampal cell cultures: a methodological study. PLoS ONE 8:e83899.

Carmeli C, Bonifazi P, Robinson HP, Small M (2013) Quantifying network properties in multi-electrode recordings: spatiotemporal characterization and inter-trial variation of evoked gamma oscillations in mouse somatosensory cortex in vitro. Front Comput Neurosci 7:134.

Chang WP, Wu JJ, Shyu BC (2013) Thalamic modulation of cingulate seizure activity via the regulation of gap junctions in mice thalamocingulate slice. PLoS ONE 8:e62952.

Dranias MR, Ju H, Rajaram E, Vandongen AM (2013) Short-term memory in networks of dissociated cortical neurons. J Neurosci 33:1940-1953.

El Hady A, Afshar G, Broking K, Schluter OM, Geisel T, Stuhmer W, Wolf F (2013) Optogenetic stimulation effectively enhances intrinsically generated network synchrony. Front Neural Circuits 7:167.

Hammond MW, Xydas D, Downes JH, Bucci G, Becerra V, Warwick K, Constanti A, Nasuto SJ, Whalley BJ (2013) Endogenous cholinergic tone modulates spontaneous network level neuronal activity in primary cortical cultures grown on multi-electrode arrays. BMC Neurosci 14:38.

Heistek TS, Ruiperez-Alonso M, Timmerman AJ, Brussaard AB, Mansvelder HD (2013) alpha2-containing GABAA receptors expressed in hippocampal region CA3 control fast network oscillations. J Physiol 591:845-858.

Jantzen SU, Ferrea S, Wach C, Quasthoff K, Illes S, Scherfeld D, Hartung HP, Seitz RJ, Dihne M (2013) In vitro neuronal network activity in NMDA receptor encephalitis. BMC Neurosci 14:17.

Kiiski H, Aanismaa R, Tenhunen J, Hagman S, Yla-Outinen L, Aho A, Yli-Hankala A, Bendel S, Skottman H, Narkilahti S (2013) Healthy human CSF promotes glial differentiation of hESC-derived neural cells while retaining spontaneous activity in existing neuronal networks. Biol Open 2:605-612.

Lavi A, Sheinin A, Shapira R, Zelmanoff D, Ashery U (2013) DOC2B and Munc13-1 Differentially Regulate Neuronal Network Activity. Cereb Cortex.

Mack CM, Lin B, Turner JD, Johnstone AF, Burgoon LD, Shafer TJ (2013) Burst and principal components analyses of mea data for 16 chemicals describe at least three effects classes. Neurotoxicology.

Massobrio P, Giachello CN, Ghirardi M, Martinoia S (2013) Selective modulation of chemical and electrical synapses of Helix neuronal networks during in vitro development. BMC Neurosci 14:22.

Nimmervoll B, White R, Yang JW, An S, Henn C, Sun JJ, Luhmann HJ (2013) LPS-induced microglial secretion of TNFalpha increases activity-dependent neuronal apoptosis in the neonatal cerebral cortex. Cereb Cortex 23:1742-1755.

Pu J, Gong H, Li X, Luo Q (2013) Developing neuronal networks: self-organized criticality predicts the future. Sci Rep 3:1081.

Schmidt SL, Chew EY, Bennett DV, Hammad MA, Frohlich F (2013) Differential effects of cholinergic and noradrenergic neuromodulation on spontaneous cortical network dynamics. Neuropharmacology 72:259-273.

Vardi R, Goldental A, Guberman S, Kalmanovich A, Marmari H, Kanter I (2013) Sudden synchrony leaps accompanied by frequency multiplications in neuronal activity. Front Neural Circuits 7:176.

Vardi R, Guberman S, Goldental A, Kanter I (2013) An experimental evidence-based computational paradigm for new logic-gates in neuronal activity. EPL (Europhysics Letters) 103.

Vardi R, Timor R, Marom S, Abeles M, Kanter I (2013) Synchronization by elastic neuronal latencies. Phys Rev E Stat Nonlin Soft Matter Phys 87:012724.

Vincent K, Tauskela JS, Mealing GA, Thivierge JP (2013) Altered network communication following a neuroprotective drug treatment. PLoS ONE 8:e54478.

Weihberger O, Okujeni S, Mikkonen JE, Egert U (2013) Quantitative examination of stimulus-response relations in cortical networks in vitro. J Neurophysiol 109:1764-1774.

Yang JW, An S, Sun JJ, Reyes-Puerta V, Kindler J, Berger T, Kilb W, Luhmann HJ (2013) Thalamic network oscillations synchronize ontogenetic columns in the newborn rat barrel cortex. Cereb Cortex 23:1299-1316.

Becker K, Eder M, Ranft A, von Meyer L, Zieglgansberger W, Kochs E, Dodt HU (2012) Low dose isoflurane exerts opposing effects on neuronal network excitability in neocortex and hippocampus. PLoS ONE 7:e39346.

Berry T, Hamilton F, Peixoto N, Sauer T (2012) Detecting connectivity changes in neuronal networks. J Neurosci Methods 209:388-397.

Biffi E, Piraino F, Pedrocchi A, Fiore GB, Ferrigno G, Redaelli A, Menegon A, Rasponi M (2012) A microfluidic platform for controlled biochemical stimulation of twin neuronal networks. Biomicrofluidics 6:24106-2410610.

Boehler MD, Leondopulos SS, Wheeler BC, Brewer GJ (2012) Hippocampal networks on reliable patterned substrates. J Neurosci Methods 203:344-353.

Chang WC, Lee CM, Shyu BC (2012) Temporal and spatial dynamics of thalamus-evoked activity in the anterior cingulate cortex. Neuroscience.

Fernandez-Ruiz A, Makarov VA, Benito N, Herreras O (2012) Schaffer-Specific Local Field Potentials Reflect Discrete Excitatory Events at Gamma Frequency That May Fire Postsynaptic Hippocampal CA1 Units. J Neurosci 32:5165-5176.

Froriep UP, Kumar A, Cosandier-Rimele D, Haussler U, Kilias A, Haas CA, Egert U (2012) Altered theta coupling between medial entorhinal cortex and dentate gyrus in temporal lobe epilepsy. Epilepsia 53:1937-1947.

Gavello D, Rojo-Ruiz J, Marcantoni A, Franchino C, Carbone E, Carabelli V (2012) Leptin counteracts the hypoxia-induced inhibition of spontaneously firing hippocampal neurons: a microelectrode array study. PLoS ONE 7:e41530.


Gonzalez-Sulser A, Wang J, Queenan BN, Avoli M, Vicini S, Dzakpasu R (2012) Hippocampal neuron firing and local field potentials in the in vitro 4-aminopyridine epilepsy model. J Neurophysiol 108:2568-2580.

Granados-Fuentes D, Norris AJ, Carrasquillo Y, Nerbonne JM, Herzog ED (2012) IA Channels Encoded by Kv1.4 and Kv4.2 Regulate Neuronal Firing in the Suprachiasmatic Nucleus and Circadian Rhythms in Locomotor Activity. J Neurosci 32:10045-10052.

Gullo F, Maffezzoli A, Dossi E, Lecchi M, Wanke E (2012) Classifying heterogeneity of spontaneous up-states: a method for revealing variations in firing probability, engaged neurons and Fano factor. J Neurosci Methods 203:407-417.

Hales CM, Zeller-Townson R, Newman JP, Shoemaker JT, Killian NJ, Potter SM (2012) Stimulus-evoked high frequency oscillations are present in neuronal networks on microelectrode arrays. Front Neural Circuits 6:29.

Harris CA, Buckley CL, Nowotny T, Passaro PA, Seth AK, Kemenes G, O'Shea M (2012) Multi-neuronal refractory period adapts centrally generated behaviour to reward. PLoS ONE 7:e42493.

Hinard V, Mikhail C, Pradervand S, Curie T, Houtkooper RH, Auwerx J, Franken P, Tafti M (2012) Key electrophysiological, molecular, and metabolic signatures of sleep and wakefulness revealed in primary cortical cultures. J Neurosci 32:12506-12517.

Kanagasabapathi TT, Massobrio P, Barone RA, Tedesco M, Martinoia S, Wadman WJ, Decre MM (2012) Functional connectivity and dynamics of cortical-thalamic networks co-cultured in a dual compartment device. J Neural Eng 9:036010.

Kapucu FE, Tanskanen JM, Mikkonen JE, Yla-Outinen L, Narkilahti S, Hyttinen JA (2012) Burst analysis tool for developing neuronal networks exhibiting highly varying action potential dynamics. Front Comput Neurosci 6:38.

Kaufman M, Corner MA, Ziv NE (2012) Long-term Relationships between Cholinergic Tone, Synchronous Bursting and Synaptic Remodeling. PLoS ONE 7:e40980.

Leondopulos SS, Boehler MD, Wheeler BC, Brewer GJ (2012) Chronic stimulation of cultured neuronal networks boosts low-frequency oscillatory activity at theta and gamma with spikes phase-locked to gamma frequencies. J Neural Eng 9:026015.

Levy O, Ziv NE, Marom S (2012) Enhancement of neural representation capacity by modular architecture in networks of cortical neurons. Eur J Neurosci 35:1753-1760.

Marconi E, Nieus T, Maccione A, Valente P, Simi A, Messa M, Dante S, Baldelli P, Berdondini L, Benfenati F (2012) Emergent functional properties of neuronal networks with controlled topology. PLoS ONE 7:e34648.

Martiniuc AV, Knoll A (2012) Interspike interval based filtering of directional selective retinal ganglion cells spike trains. Comput Intell Neurosci 2012:918030.

Newman JP, Zeller-Townson R, Fong MF, Arcot Desai S, Gross RE, Potter SM (2012) Closed-Loop, Multichannel Experimentation Using the Open-Source NeuroRighter Electrophysiology Platform. Front Neural Circuits 6:98.

Perez-Uribe A, Santizábal HF (2012) Artificial Neural Networks and Data Compression Statistics for the Discrimination of Cultured Neuronal Activity. In: Lecture Notes in Computer Science, pp 201-208.

Schock SC, Jolin-Dahel KS, Schock PC, Theiss S, Arbuthnott GW, Garcia-Munoz M, Staines WA (2012) Development of dissociated cryopreserved rat cortical neurons in vitro. J Neurosci Methods 205:324-333.

Stephens CL, Toda H, Palmer TD, DeMarse TB, Ormerod BK (2012) Adult neural progenitor cells reactivate superbursting in mature neural networks. Exp Neurol 234:20-30.

Tessadori J, Bisio M, Martinoia S, Chiappalone M (2012) Modular neuronal assemblies embodied in a closed-loop environment: toward future integration of brains and machines. Front Neural Circuits 6:99.

van Drongelen W, Wildeman A, Radojicic M, Suresh J, Wang J, Marks J (2012) A Novel Technique to Evaluate Network Properties. In: Gordon Research Conference 2012, Mechanisms of Epilepsy & Neuronal Synchronization.

Vardi R, Wallach A, Kopelowitz E, Abeles M, Marom S, Kanter I (2012) Synthetic reverberating activity patterns embedded in networks of cortical neurons. EPL (Europhysics Letters) 97:66002.

Wallach A, Marom S (2012) Interactions between network synchrony and the dynamics of neuronal threshold. J Neurophysiol 107:2926-2936.

Yang H, Shew WL, Roy R, Plenz D (2012) Maximal variability of phase synchrony in cortical networks with neuronal avalanches. J Neurosci 32:1061-1072.

Zullo L, Chiappalone M, Martinoia S, Benfenati F (2012) A "spike-based" grammar underlies directional modification in network connectivity: effect on bursting activity and implications for bio-hybrids systems. PLoS ONE 7:e49299.

Abdoun O, Joucla S, Mazzocco C, Yvert B (2011) NeuroMap: A Spline-Based Interactive Open-Source Software for Spatiotemporal Mapping of 2D and 3D MEA Data. Front Neuroinformatics 4:119.

Arnson HA, Holy TE (2011) Chemosensory burst coding by mouse vomeronasal sensory neurons. J Neurophysiol 106:409-420.

Baltz T, Herzog A, Voigt T (2011) Slow oscillating population activity in developing cortical networks: models and experimental results. J Neurophysiol 106:1500-1514.

Blenkinsop TA, Lang EJ (2011) Synaptic action of the olivocerebellar system on cerebellar nuclear spike activity. J Neurosci 31:14708-14720.

Brockmann MD, Poschel B, Cichon N, Hanganu-Opatz IL (2011) Coupled oscillations mediate directed interactions between prefrontal cortex and hippocampus of the neonatal rat. Neuron 71:332-347.

Brodersen KH, Haiss F, Ong CS, Jung F, Tittgemeyer M, Buhmann JM, Weber B, Stephan KE (2011) Model-based feature construction for multivariate decoding. Neuroimage 56:601-615.

Clifford MA, Kanwal JK, Dzakpasu R, Donoghue MJ (2011) EphA4 expression promotes network activity and spine maturation in cortical neuronal cultures. Neural Dev 6:21.

Difato F, Dal Maschio M, Marconi E, Ronzitti G, Maccione A, Fellin T, Berdondini L, Chieregatti E, Benfenati F, Blau A (2011) Combined optical tweezers and laser dissector for controlled ablation of functional connections in neural networks. J Biomed Opt 16:051306.

Duvarci S, Popa D, Pare D (2011) Central Amygdala Activity during Fear Conditioning. J Neurosci 31:289-294.

Filatov G, Krishnan GP, Rulkov NF, Bazhenov M (2011) Dynamics of epileptiform activity in mouse hippocampal slices. J Biol Phys 37:347-360.

Fucke T, Suchanek D, Nawrot MP, Seamari Y, Heck DH, Aertsen A, Boucsein C (2011) Stereotypical spatiotemporal activity patterns during slow-wave activity in the neocortex. J Neurophysiol 106:3035-3044.

Ganmor E, Segev R, Schneidman E (2011) Sparse low-order interaction network underlies a highly correlated and learnable neural population code. Proc Natl Acad Sci U S A 108:9679-9684.

Geissler M, Faissner A (2011) A new indirect co-culture set up of mouse hippocampal neurons and cortical astrocytes on microelectrode arrays. J Neurosci Methods 204:262-272.

Goyal G, Nam Y (2011) Neuronal Micro-culture Engineering by Microchannel Devices of Cellular Scale Dimensions. Biomed Eng Lett 1:89-98.

Janiesch PC, Kruger HS, Poschel B, Hanganu-Opatz IL (2011) Cholinergic control in developing prefrontal-hippocampal networks. J Neurosci 31:17955-17970.

Jansen R, Timmerman J, Loos M, Spijker S, van Ooyen A, Brussaard AB, Mansvelder HD, Smit AB, de Gunst M, Linkenkaer-Hansen K (2011) Novel candidate genes associated with hippocampal oscillations. PLoS ONE 6:e26586.

Levine-Small N, Yekutieli Z, Aljadeff Y, Boccaletti S, Ben Jacob E, Barzilai A (2011) Reduced Synchronization Persistence in Neural Networks derived from Atm-Deficient Mice. Frontiers in Neuroscience 5.

Mahn M (2011) Dynamical modes in coupled large scale networks.

Makarova J, Ibarz JM, Makarov VA, Benito N, Herreras O (2011) Parallel readout of pathway-specific inputs to laminated brain structures. Front Syst Neurosci 5:77.

Manu M, Baccus SA (2011) Disinhibitory gating of retinal output by transmission from an amacrine cell. Proc Natl Acad Sci U S A 108:18447-18452.

Mauceri D, Freitag HE, Oliveira AM, Bengtson CP, Bading H (2011) Nuclear Calcium-VEGFD Signaling Controls Maintenance of Dendrite Arborization Necessary for Memory Formation. Neuron 71:117-130.

Nam Y, Wheeler BC (2011) In vitro microelectrode array technology and neural recordings. Crit Rev Biomed Eng 39:45-61.

Novellino A, Chiappalone M, Tessadori J, D'Angelo P, Defranchi E, Martinoia S (2011) Bioartificial Brains and Mobile Robots In: Mobile Robots - Control Architectures, Bio-Interfacing, Navigation, Multi Robot Motion Planning and Operator Training (Będkowski J, ed): InTech.

Pan L, Alagapan S, Franca E, Brewer GJ, Wheeler BC (2011) Propagation of action potential activity in a predefined microtunnel neural network. J Neural Eng 8:046031.

Piet R, Garenne A, Farrugia F, Le Masson G, Marsicano G, Chavis P, Manzoni OJ (2011) State-dependent, bidirectional modulation of neural network activity by endocannabinoids. J Neurosci 31:16591-16596.

Plenz D, Stewart CV, Shew W, Yang H, Klaus A, Bellay T (2011) Multi-electrode Array Recordings of Neuronal Avalanches in Organotypic Cultures. JoVe.

Poil SS, Jansen R, van Aerde K, Timmerman J, Brussaard AB, Mansvelder HD, Linkenkaer-Hansen K (2011) Fast network oscillations in vitro exhibit a slow decay of temporal auto-correlations. Eur J Neurosci 34:394-403.

Robinette BL, Harrill JA, Mundy WR, Shafer TJ (2011) In vitro assessment of developmental neurotoxicity: use of microelectrode arrays to measure functional changes in neuronal network ontogeny. Front Neuroengineering 4:1.

Shein-Idelson M, Ben-Jacob E, Hanein Y (2011) Engineered neuronal circuits: a new platform for studying the role of modular topology. Front Neuroeng 4:10.

Shew WL, Yang H, Yu S, Roy R, Plenz D (2011) Information capacity and transmission are maximized in balanced cortical networks with neuronal avalanches. J Neurosci 31:55-63.

Verpelli C, Dvoretskova E, Vicidomini C, Rossi F, Chiappalone M, Schoen M, Di Stefano B, Mantegazza R, Broccoli V, Boeckers TM, Dityatev A, Sala C (2011) Importance of shank3 in regulating metabotropic glutamate receptor 5 (mGluR5) expression and signaling at synapses. J Biol Chem.

Wallach A, Eytan D, Gal A, Zrenner C, Marom S (2011) Neuronal Response Clamp. Frontiers in Neuroengineering 4.

Walter J, Honsek SD, Illes S, Wellen JM, Hartung HP, Rose CR, Dihne M (2011) A new role for interferon gamma in neural stem/precursor cell dysregulation. Mol Neurodegener 6:18.

Xydas D, Downes JH, Spencer MC, Hammond MW, Nasuto SJ, Whalley BJ, Becerra VM, Warwick K (2011) Revealing ensemble state transition patterns in multi-electrode neuronal recordings using hidden Markov models. IEEE Trans Neural Syst Rehabil Eng 19:345-355.

Baltz T, de Lima AD, Voigt T (2010) Contribution of GABAergic interneurons to the development of spontaneous activity patterns in cultured neocortical networks. Front Cell Neurosci 4:15.

Biffi E, Ghezzi D, Pedrocchi A, Ferrigno G (2010) Development and validation of a spike detection and classification algorithm aimed at implementation on hardware devices. Comput Intell Neurosci:659050.

Boido D, Farisello P, Cesca F, Ferrea E, Valtorta F, Benfenati F, Baldelli P (2010) Cortico-hippocampal hyperexcitability in synapsin I/II/III knockout mice: age-dependency and response to the antiepileptic drug levetiracetam. Neuroscience.

Bologna LL, Nieus T, Tedesco M, Chiappalone M, Benfenati F, Martinoia S (2010) Low-frequency stimulation enhances burst activity in cortical cultures during development. Neuroscience 165:692-704.

Bologna LL, Pasquale V, Garofalo M, Gandolfo M, Baljon PL, Maccione A, Martinoia S, Chiappalone M (2010) Investigating neuronal activity by SPYCODE multi-channel data analyzer. Neural Netw 23:685-697.

Cantrell DR, Cang J, Troy JB, Liu X (2010) Non-centered spike-triggered covariance analysis reveals neurotrophin-3 as a developmental regulator of receptive field properties of ON-OFF retinal ganglion cells. PLoS Comput Biol 6:e1000967.

Chen W, Hobbs JP, Tang A, Beggs JM (2010) A few strong connections: optimizing information retention in neuronal avalanches. BMC Neurosci 11:3.

Cymerblit-Sabba A, Schiller Y (2010) Network dynamics during development of pharmacologically induced epileptic seizures in rats in vivo. J Neurosci 30:1619-1630.

Destro-Filho JB, Estombelo-Montesco CA, Murta-Junior LO, Martinoia S, Chiappalone M, Moreira-Marques S, Neves AF (2010) Quantitative estimation of the nonstationary behavior of neural spontaneous activity. Comput Intell Neurosci:785919.

Feldt S, Wang JX, Shtrahman E, Dzakpasu R, Olariu E, Zochowski M (2010) Functional clustering in hippocampal cultures: relating network structure and dynamics. Phys Biol 7:046004.

Finberg JP, Gluzman Z, Reshef M, Loboda Y, Mohsen U, Bressler-Stramer T, Miari R, Gepstein L, Marom S, Feld Y (2010) Modulation of excessive neuronal activity by fibroblasts: potential use in treatment of Parkinson's disease. Restor Neurol Neurosci 28:803-815.

Gal A, Eytan D, Wallach A, Sandler M, Schiller J, Marom S (2010) Dynamics of Excitability over Extended Timescales in Cultured Cortical Neurons. J Neurosci 30:16332-16342.

Garcia-Munoz M, Carrillo-Reid L, Arbuthnott GW (2010) Functional anatomy: dynamic States in Basal Ganglia circuits. Front Neuroanat 4:144.

Gonzalez-Sulser A, Wang J, Motamedi GK, Avoli M, Vicini S, Dzakpasu R (2010) The 4-aminopyridine in vitro epilepsy model analyzed with a perforated multi-electrode array. Neuropharmacology.

Gritsun TA, Le Feber J, Stegenga J, Rutten WL (2010) Network bursts in cortical cultures are best simulated using pacemaker neurons and adaptive synapses. Biol Cybern 102:293-310.

Gullo F, Mazzetti S, Maffezzoli A, Dossi E, Lecchi M, Amadeo A, Krajewski J, Wanke E (2010) Orchestration of "presto" and "largo" synchrony in up-down activity of cortical networks. Frontiers in Neural Circuits 4.

Hales CM, Rolston JD, Potter SM (2010) How to culture, record and stimulate neuronal networks on micro-electrode arrays (MEAs). J Vis Exp.

Ibarz JM, Foffani G, Cid E, Inostroza M, Menendez de la Prida L (2010) Emergent Dynamics of Fast Ripples in the Epileptic Hippocampus. J Neurosci 30:16249-16261.

Kermany E, Gal A, Lyakhov V, Meir R, Marom S, Eytan D (2010) Tradeoffs and constraints on neural representation in networks of cortical neurons. J Neurosci 30:9588-9596.

Kim JH, Kang G, Nam Y, Choi YK (2010) Surface-modified microelectrode array with flake nanostructure for neural recording and stimulation. Nanotechnology 21:85303.

Krumin M, Reutsky I, Shoham S (2010) Correlation-based analysis and generation of multiple spike trains using hawkes models with an exogenous input. Front Comput Neurosci 4:147.

le Feber J, Stegenga J, Rutten WL (2010) The effect of slow electrical stimuli to achieve learning in cultured networks of rat cortical neurons. PLoS ONE 5:e8871.

Mennerick S, Chisari M, Shu HJ, Taylor A, Vasek M, Eisenman LN, Zorumski CF (2010) Diverse voltage-sensitive dyes modulate GABAA receptor function. J Neurosci 30:2871-2879.

Nakahara K, Katayama T, Maruyama K, Ida T, Mori K, Miyazato M, Kangawa K, Murakami N (2010) Comparison of feeding suppression by the anorexigenic hormones neuromedin U and neuromedin S in rats. J Endocrinol 207:185-193.

Pegoraro S, Broccard FD, Ruaro ME, Bianchini D, Avossa D, Pastore G, Bisson G, Altafini C, Torre V (2010) Sequential steps underlying neuronal plasticity induced by a transient exposure to gabazine. J Cell Physiol 222:713-728.

Shein Idelson M, Ben-Jacob E, Hanein Y (2010) Innate synchronous oscillations in freely-organized small neuronal circuits. PLoS ONE 5:e14443.

Shew WL, Bellay T, Plenz D (2010) Simultaneous multi-electrode array recording and two-photon calcium imaging of neural activity. J Neurosci Methods.

Shteingart H, Raichman N, Baruchi I, Ben-Jacob E (2010) Wrestling model of the repertoire of activity propagation modes in quadruple neural networks. Front Comput Neurosci 4:12.

Sun JJ, Kilb W, Luhmann HJ (2010) Self-organization of repetitive spike patterns in developing neuronal networks in vitro. Eur J Neurosci 32:1289-1299.

Tetzlaff C, Okujeni S, Egert U, Worgotter F, Butz M (2010) Self-organized criticality in developing neuronal networks. PLoS Comput Biol 6:e1001013.

Valeeva G, Abdullin A, Tyzio R, Skorinkin A, Nikolski E, Ben-Ari Y, Khazipov R (2010) Temporal coding at the immature depolarizing GABAergic synapse. Frontiers in Cellular Neuroscience 4:12.

Warwick K, Xydas D, Nasuto SJ, Becerra VM, Hammond MW, Downes JH, Marshall S, Whalley BJ (2010) Controlling a mobile robot with a biological brain. Defence Science Journal 60

Yang F, Gong XW, Gong HQ, Zhang PM, Liang PJ, Lu Q (2010) MicroeIectrode array recordings of excitability of Iow Mg2+-induced acute hippocampaI slices. Neural Regen Res 5:1548-1551.

Yla-Outinen L, Heikkila J, Skottman H, Suuronen R, Aanismaa R, Narkilahti S (2010) Human cell-based micro electrode array platform for studying neurotoxicity. Front Neuroengineering 3.

Zebinden CF (2010) Leader neurons in living neural networks and in leaky integrate and fire neuron models. Département de physique théorique.

Bakker R, Schubert D, Levels K, Bezgin G, Bojak I, Kotter R (2009) Classification of cortical microcircuits based on micro-electrode-array data from slices of rat barrel cortex. Neural Netw.

Baljon PL, Chiappalone M, Martinoia S (2009) Interaction of electrically evoked responses in networks of dissociated cortical neurons. Phys Rev E Stat Nonlin Soft Matter Phys 80:031906.

Berdondini L, Massobrio P, Chiappalone M, Tedesco M, Imfeld K, Maccione A, Gandolfo M, Koudelka-Hep M, Martinoia S (2009) Extracellular recordings from locally dense microelectrode arrays coupled to dissociated cortical cultures. J Neurosci Methods 177:386-396.

Brewer GJ, Boehler MD, Ide AN, Wheeler BC (2009) Chronic electrical stimulation of cultured hippocampal networks increases spontaneous spike rates. J Neurosci Methods 184:104-109.

Brewer GJ, Boehler MD, Pearson RA, Demaris AA, Ide AN, Wheeler BC (2009) Neuron network activity scales exponentially with synapse density. J Neural Eng 6:14001.

Chen L, Pan H (2009) Precisely Repeating Spike Temporal Sequences in Spontaneous

Activity of Cultured Hippocampal Neuronal Networks on

Multi-electrode Arrays. Seventh International Conference on Photonics and Imaging in Biology and Medicine.

Czarnecki A, Magloire V, Streit J (2009) Modulation of intrinsic spiking in spinal cord neurons. J Neurophysiol 102:2441-2452.

Dong CY, Lim J, Nam Y, Cho KH (2009) Systematic analysis of synchronized oscillatory neuronal networks reveals an enrichment for coupled direct and indirect feedback motifs. Bioinformatics 25:1680-1685.

Garofalo M, Nieus T, Massobrio P, Martinoia S (2009) Evaluation of the performance of information theory-based methods and cross-correlation to estimate the functional connectivity in cortical networks. PLoS One 4:e6482.

Gullo F, Maffezzoli A, Dossi E, Wanke E (2009) Short-latency cross- and autocorrelation identify clusters of interacting cortical neurons recorded from multi-electrode array. J Neurosci Methods 181:186-198.

Heikkila TJ, Yla-Outinen L, Tanskanen JM, Lappalainen RS, Skottman H, Suuronen R, Mikkonen JE, Hyttinen JA, Narkilahti S (2009) Human embryonic stem cell-derived neuronal cells form spontaneously active neuronal networks in vitro. Exp Neurol 218:109-116.

Hosp JA, Molina-Luna K, Hertler B, Atiemo CO, Luft AR (2009) Dopaminergic modulation of motor maps in rat motor cortex: an in vivo study. Neuroscience 159:692-700.

Illes S, Theiss S, Hartung HP, Siebler M, Dihne M (2009) Niche-dependent development of functional neuronal networks from embryonic stem cell-derived neural populations. BMC Neurosci 10:93.

Jungblut M, Knoll W, Thielemann C, Pottek M (2009) Triangular neuronal networks on microelectrode arrays: an approach to improve the properties of low-density networks for extracellular recording. Biomed Microdevices.

Luhmann HJ, Kilb W, Hanganu-Opatz IL (2009) Subplate cells: amplifiers of neuronal activity in the developing cerebral cortex. Front Neuroanat 3:19.

Masi E, Ciszak M, Stefano G, Renna L, Azzarello E, Pandolfi C, Mugnai S, Baluska F, Arecchi FT, Mancuso S (2009) Spatiotemporal dynamics of the electrical network activity in the root apex. Proc Natl Acad Sci U S A.

Massobrio P, Tedesco M, Giachello C, Ghirardi M, Fiumara F, Martinoia S (2009) Helix neuronal ensembles with controlled cell type composition and placement develop functional polysynaptic circuits on Micro-Electrode Arrays. Neurosci Lett.

Minerbi A, Kahana R, Goldfeld L, Kaufman M, Marom S, Ziv NE (2009) Long-Term Relationships between Synaptic Tenacity, Synaptic Remodeling, and Network Activity. PLoS Biol 7:e1000136.

Mok SY, Lim YM, Goh SY (2009) A device to facilitate preparation of high-density neural cell cultures in MEAs. J Neurosci Methods 179:284-291.

Musick K, Khatami D, Wheeler BC (2009) Three-dimensional micro-electrode array for recording dissociated neuronal cultures. Lab Chip 9:2036-2042.

Otto F, Illes S, Opatz J, Laryea M, Theiss S, Hartung HP, Schnitzler A, Siebler M, Dihne M (2009) Cerebrospinal fluid of brain trauma patients inhibits in vitro neuronal network function via NMDA receptors. Ann Neurol 66:546-555.

Pajevic S, Plenz D (2009) Efficient network reconstruction from dynamical cascades identifies small-world topology of neuronal avalanches. PLoS Comput Biol 5:e1000271.

Pasquale V, Martinoia S, Chiappalone M (2009) A self-adapting approach for the detection of bursts and network bursts in neuronal cultures. J Comput Neurosci.

Paz R, Bauer EP, Pare D (2009) Measuring correlations and interactions among four simultaneously recorded brain regions during learning. J Neurophysiol 101:2507-2515.

Ribeiro P, Simonotto J, Kaiser M, Silva F (2009) Parallel calculation of multi-electrode array correlation networks. J Neurosci Methods.

Shew WL, Yang H, Petermann T, Roy R, Plenz D (2009) Neuronal avalanches imply maximum dynamic range in cortical networks at criticality. J Neurosci 29:15595-15600.

Shoval A, Adams C, David-Pur M, Shein M, Hanein Y, Sernagor E (2009) Carbon nanotube electrodes for effective interfacing with retinal tissue. Front Neuroengineering 2:4.

Wiegert JS, Hofmann F, Bading H, Bengtson CP (2009) A transcription-dependent increase in miniature EPSC frequency accompanies late-phase plasticity in cultured hippocampal neurons. BMC Neurosci 10:124.

Yang JW, Hanganu-Opatz IL, Sun JJ, Luhmann HJ (2009) Three patterns of oscillatory activity differentially synchronize developing neocortical networks in vivo. J Neurosci 29:9011-9025.

Zhou W, Li X, Liu M, Zhao Y, Zhu G, Luo Q (2009) Homeostatically regulated synchronized oscillations induced by short-term tetrodotoxin treatment in cultured neuronal network. Biosystems 95:61-66.

Bakkum DJ, Chao ZC, Potter SM (2008) Long-Term Activity-Dependent Plasticity of Action Potential Propagation Delay and Amplitude in Cortical Networks. PLoS ONE 3:e2088.

Bakkum DJ, Chao ZC, Potter SM (2008) Spatio-temporal electrical stimuli shape behavior of an embodied cortical network in a goal-directed learning task. J Neural Eng 5:310-323.

Baruchi I, Volman V, Raichman N, Shein M, Ben-Jacob E (2008) The emergence and properties of mutual synchronization in in vitro coupled cortical networks. Eur J Neurosci 28:1825-1835.

Ben-Jacob E, Hanein Y (2008) Carbon nanotube micro-electrodes for neuronal interfacing. Journal of Materials Chemistry 18:1581-1586.

Brewer GJ, Boehler MD, Jones TT, Wheeler BC (2008) NbActiv4 medium improvement to Neurobasal/B27 increases neuron synapse densities and network spike rates on multielectrode arrays. J Neurosci Methods 170:181-187.

Chiappalone M, Casagrande S, Tedesco M, Valtorta F, Baldelli P, Martinoia S, Benfenati F (2008) Opposite Changes in Glutamatergic and GABAergic Transmission Underlie the Diffuse Hyperexcitability of Synapsin I-Deficient Cortical Networks. Cereb Cortex.

Chiappalone M, Massobrio P, Martinoia S (2008) Network plasticity in cortical assemblies. Eur J Neurosci 28:221-237.

Dockendorf KP, Park I, He P, Principe JC, Demarse TB (2008) Liquid state machines and cultured cortical networks: The separation property. Biosystems.

Eckmann JP, Shimshon Jacobi S, Marom S, Moses E, Zbinden C (2008) Leader neurons in population bursts of 2D living neural networks. New Journal of Physics 10:19pp.

Gireesh ED, Plenz D (2008) Neuronal avalanches organize as nested theta- and beta/gamma-oscillations during development of cortical layer 2/3. Proc Natl Acad Sci U S A.

Glaser T, Opitz T, Kischlat T, Konang R, Sasse P, Fleischmann BK, Engel W, Nayernia K, Brustle O (2008) Adult Germline Stem Cells as a Source of Functional Neurons and Glia. Stem Cells.

Huang Y, Li X, Li Y, Xu Q, Lu Q, Liu Q (2008) An integrative analysis platform for multiple neural spike train data. J Neurosci Methods 172:303-311.

Massobrio P, Martinoia S (2008) Modelling small-patterned neuronal networks coupled to microelectrode arrays. J Neural Eng 5:350-359.

Meier R, Egert U, Aertsen A, Nawrot MP (2008) FIND--a unified framework for neural data analysis. Neural Netw 21:1085-1093.

Park I, Paiva AR, Demarse TB, Principe JC (2008) An efficient algorithm for continuous time cross correlogram of spike trains. J Neurosci Methods 168:514-523.

Pasquale V, Massobrio P, Bologna LL, Chiappalone M, Martinoia S (2008) Self-organization and neuronal avalanches in networks of dissociated cortical neurons. Neuroscience.

Raichman N, Ben-Jacob E (2008) Identifying repeating motifs in the activation of synchronized bursts in cultured neuronal networks. J Neurosci Methods 170:96-110.

Rubinsky L, Raichman N, Lavee J, Frenk H, Ben-Jacob E (2008) Spatio-temporal motifs 'remembered' in neuronal networks following profound hypothermia. Neural Netw.

Runne H, Regulier E, Kuhn A, Zala D, Gokce O, Perrin V, Sick B, Aebischer P, Deglon N, Luthi-Carter R (2008) Dysregulation of gene expression in primary neuron models of Huntington's disease shows that polyglutamine-related effects on the striatal transcriptome may not be dependent on brain circuitry. J Neurosci 28:9723-9731.

Scarlatos A, Cadotte AJ, DeMarse TB, Welt BA (2008) Cortical networks grown on microelectrode arrays as a biosensor for botulinum toxin. J Food Sci 73:E129-136.

Serra M, Chan A, Dubey M, Gilman V, Shea TB (2008) Folate and S-adenosylmethionine modulate synaptic activity in cultured cortical neurons: acute differential impact on normal and apolipoprotein-deficient mice. Phys Biol 5:44002.

Shahaf G, Eytan D, Gal A, Kermany E, Lyakhov V, Zrenner C, Marom S (2008) Order-based representation in random networks of cortical neurons. PLoS Comput Biol 4:e1000228.

Shein M, Greenbaum A, Gabay T, Sorkin R, David-Pur M, Ben-Jacob E, Hanein Y (2008) Engineered neuronal circuits shaped and interfaced with carbon nanotube microelectrode arrays. Biomed Microdevices.

Shein M, Volman V, Raichman N, Hanein Y, Ben-Jacob E (2008) Management of synchronized network activity by highly active neurons. Phys Biol 5:36008.

Smith JL, Hobbs J, Tang A, Jackson D, Chen W, Patel H, Prieto A, Sher A, Litke A, Beggs JM (2008) Network comparison of epileptogenic human cortex and excited rat cortex. In: J Neurosurg Pediatrics, pp A351-352.

Stegenga J, Le Feber J, Marani E, Rutten WL (2008) Analysis of cultured neuronal networks using intraburst firing characteristics. IEEE Trans Biomed Eng 55:1382-1390.

Tang A, Jackson D, Hobbs J, Chen W, Smith JL, Patel H, Prieto A, Petrusca D, Grivich MI, Sher A, Hottowy P, Dabrowski W, Litke AM, Beggs JM (2008) A Maximum Entropy Model Applied to Spatial and Temporal Correlations from Cortical Networks In Vitro. J Neurosci 28:505-518.

Vajda I, van Pelt J, Wolters P, Chiappalone M, Martinoia S, van Someren EJ, van Ooyen A (2008) Low-Frequency Stimulation Induces Stable Transitions in Stereotypical Activity in Cortical Networks. Biophys J.

Wahl AS, Buchthal B, Rode F, Bomholt SF, Freitag HE, Hardingham GE, Ronn LC, Bading H (2008) Hypoxic/ischemic conditions induce expression of the putative pro-death gene Clca1 via activation of extrasynaptic N-methyl-d-aspartate receptors. Neuroscience.

Wallach A, Eytan D, Marom S, Meir R (2008) Selective adaptation in networks of heterogeneous populations: model, simulation, and experiment. PLoS Comput Biol 4:e29.

Yang L, Su J, Zhang X, Jiang C (2008) Hypercapnia modulates synaptic interaction of cultured brainstem neurons. Respir Physiol Neurobiol 160:147-159.

Ban J, Bonifazi P, Pinato G, Broccard FD, Studer L, Torre V, Ruaro ME (2007) Embryonic stem cell-derived neurons form functional networks in vitro. Stem Cells 25:738-749.

Baruchi I, Ben-Jacob E (2007) Towards neuro-memory-chip: Imprinting multiple memories in cultured neural networks. Phys Rev E 75:050901.

Chao ZC, Bakkum DJ, Potter SM (2007) Region-specific network plasticity in simulated and living cortical networks: comparison of the center of activity trajectory (CAT) with other statistics. J Neural Eng 4:294-308.

Chiappalone M, Vato A, Berdondini L, Koudelka-Hep M, Martinoia S (2007) Network dynamics and synchronous activity in cultured cortical neurons. Int J Neural Syst 17:87-103.

Esposti F, Signorini MG, Lamanna J, Gullo F, Wanke E (2007) How do TTX and AP5 affect the post-recovery neuronal network activity synchronization? Conf Proc IEEE Eng Med Biol Soc 2007:3012-3015.

Feber Jl, Rutten WLC, Stegenga J, Wolters PS, Ramakers GJA, Pelt Jv (2007) Conditional firing probabilities in cultured neuronal networks: a stable underlying structure in widely varying spontaneous activity patterns. Journal of Neural Engineering:54.

Fuchs E, Ayali A, Robinson A, Hulata E, Ben-Jacob E (2007) Coemergence of regularity and complexity during neural network development. Dev Neurobiol 67:1802-1814.

Heck N, Golbs A, Riedemann T, Sun JJ, Lessmann V, Luhmann HJ (2007) Activity-Dependent Regulation of Neuronal Apoptosis in Neonatal Mouse Cerebral Cortex. Cereb Cortex.

Illes S, Fleischer W, Siebler M, Hartung HP, Dihne M (2007) Development and pharmacological modulation of embryonic stem cell-derived neuronal network activity. Exp Neurol.

Jacobi S, Moses E (2007) Variability and corresponding amplitude-velocity relation of activity propagating in one-dimensional neural cultures. J Neurophysiol 97:3597-3606.

Jimbo Y (2007) MEA-based recording of neuronal activity in vitro. Arch Ital Biol 145:289-297.

Kimoto H, Sato K, Nodari F, Haga S, Holy TE, Touhara K (2007) Sex- and strain-specific expression and vomeronasal activity of mouse ESP family peptides. Curr Biol 17:1879-1884.

le Feber J, Rutten WLC, Stegenga J, Wolters PS, Ramakers GJA, van Pelt J (2007) Conditional firing probabilities in cultured neuronal networks: a stable underlying structure in widely varying spontaneous activity patterns. J Neural Eng 4:54-67.

le Feber J, van Pelt J, Rutten W (2007) Latency dependent development of related firing patterns of cultured cortical neurons. Conf Proc IEEE Eng Med Biol Soc 1:3000-3003.

Li X, Zhou W, Zeng S, Liu M, Luo Q (2007) Long-term recording on multi-electrode array reveals degraded inhibitory connection in neuronal network development. Biosens Bioelectron 22:1538-1543.

Madhavan R, Chao ZC, Potter SM (2007) Plasticity of recurring spatiotemporal activity patterns in cortical networks. Phys Biol 4:181-193.

Maffezzoli A, Signorini MG, Gullo F, Wanke E (2007) Non linear methods estimating neural network behavior on Micro-Electrode Array technology. Conf Proc IEEE Eng Med Biol Soc 1:449-452.

Mazzoni A, Broccard FD, Garcia-Perez E, Bonifazi P, Ruaro ME, Torre V (2007) On the dynamics of the spontaneous activity in neuronal networks. PLoS ONE 2:e439.

Meier R, Haussler U, Aertsen A, Deransart C, Depaulis A, Egert U (2007) Short-term changes in bilateral hippocampal coherence precede epileptiform events. Neuroimage 38:138-149.

Plenz D, Thiagarajan TC (2007) The organizing principles of neuronal avalanches: cell assemblies in the cortex? Trends Neurosci 30:101-110.

Potter SM (2007) What Can AI Get from Neuroscience? In: 50 Years of AI (Lungarella M, ed), pp 174-185. Heidelberg: Springer Verlag.

Rolston JD, Wagenaar DA, Potter SM (2007) Precisely timed spatiotemporal patterns of neural activity in dissociated cortical cultures. Neuroscience.

Soussou WV, Yoon GJ, Brinton RD, Berger TW (2007) Neuronal network morphology and electrophysiologyof hippocampal neurons cultured on surface-treated multielectrode arrays. IEEE Trans Biomed Eng 54:1309-1320.

Stewart CV, Plenz D (2007) Homeostasis of neuronal avalanches during postnatal cortex development in vitro. J Neurosci Methods.

Su J, Yang L, Zhang X, Rojas A, Shi Y, Jiang C (2007) High CO2 chemosensitivity versus wide sensing spectrum: a paradoxical problem and its solutions in cultured brainstem neurons. J Physiol 578:831-841.

Sun JJ, Luhmann HJ (2007) Spatio-temporal dynamics of oscillatory network activity in the neonatal mouse cerebral cortex. Eur J Neurosci 26:1995-2004.

Volman V, Ben-Jacob E, Levine H (2007) The astrocyte as a gatekeeper of synaptic information transfer. Neural Comput 19:303-326.

Volman V, Gerkin RC, Lau PM, Ben-Jacob E, Bi GQ (2007) Calcium and synaptic dynamics underlying reverberatory activity in neuronal networks. Phys Biol 4:91-103.

Volmer R, Prat CM, Le Masson G, Garenne A, Gonzalez-Dunia D (2007) Borna disease virus infection impairs synaptic plasticity. J Virol 81:8833-8837.

Zeck GM, Masland RH (2007) Spike train signatures of retinal ganglion cell types. Eur J Neurosci 26:367-380.

Alessio R, Cozzi L, D'Angelo P, Sanguineti V (2006) Cultures of dissociated neurons display a variety of avalanche behaviours. European Symposium on Artificial Neural Networks.

Berdondini L, Chiappalone M, vanderWala PD, Imfelda K, deRooija NF, Koudelka-Hepa M, Tedescob M, Martinoiab S, vanPeltd J, LeMassonc G, Garennec A (2006) A microelectrodearray (MEA) integrated with clustering structures for investigating in vitro neurodynamics in confined interconnected sub-populations of neurons. Sensors and Actuators B 114:530–541.

Blenkinsop TA, Lang EJ (2006) Block of inferior olive gap junctional coupling decreases Purkinje cell complex spike synchrony and rhythmicity. J Neurosci 26:1739-1748.

Chang JC, Brewer GJ, Wheeler BC (2006) Neuronal network structuring induces greater neuronal activity through enhanced astroglial development. J Neural Eng 3:217-226.

Chen C, Chen L, Lin Y, Zeng S, Luo Q (2006) The origin of spontaneous synchronized burst in cultured neuronal networks based on multi-electrode arrays. Biosystems 85:137-143.

Chiappalone M, Bove M, Vato A, Tedesco M, Martinoia S (2006) Dissociated cortical networks show spontaneously correlated activity patterns during in vitro development. Brain Res 1093:41-53.

Cozzi L, D'Angelo P, Sanguineti V (2006) Encoding of time-varying stimuli in populations of cultured neurons. Biol Cybern 94:335-349.

Egert U (2006) NETWORKS ON CHIPS: Spatial and temporal activity dynamics of functional networks in brain slices and cardiac tissue. In.

Eytan D, Marom S (2006) Dynamics and effective topology underlying synchronization in networks of cortical neurons. J Neurosci 26:8465-8476.

Raichman N, Volman V, Ben-Jacob E (2006) Collective plasticity and individual stability in cultured neuronal networks. Neurocomputing 69:1150-1154.

Sergeeva OA, Klyuch BP, Fleischer W, Eriksson KS, Korotkova TM, Siebler M, Haas HL (2006) P2Y receptor-mediated excitation in the posterior hypothalamus. Eur J Neurosci 24:1413-1426.

Su J, Jiang C (2006) Multicellular recordings of cultured brainstem neurons in microelectrode arrays. Cell Tissue Res 326:25-33.

Wagenaar DA, Pine J, Potter SM (2006) Searching for plasticity in dissociated cortical cultures on multi-electrode arrays. J Negat Results Biomed 5:16.

Warland DK, Huberman AD, Chalupa LM (2006) Dynamics of spontaneous activity in the fetal macaque retina during development of retinogeniculate pathways. J Neurosci 26:5190-5197.

Arnold FJ, Hofmann F, Bengtson CP, Wittmann M, Vanhoutte P, Bading H (2005) Microelectrode array recordings of cultured hippocampal networks reveal a simple model for transcription and protein synthesis-dependent plasticity. J Physiol 564:3-19.

Bonifazi P, Ruaro ME, Torre V (2005) Statistical properties of information processing in neuronal networks. Eur J Neurosci 22:2953-2964.

Cadotte AJ, Schwarz C, T. B. (2005) Poly-HEMA as a drug delivery device for in vitro neural networks on micro-electrode arrays. J Neural Eng 2:114-122.

Chao ZC, Bakkum DJ, Wagenaar DA, Potter SM (2005) Effects of random external background stimulation on network synaptic stability after tetanization: a modeling study. Neuroinformatics 3:263-280.

Geis M (2005) Mustererkennung mit künstlichen neuralen Netzen am Beispiel von neuronenbasierten Biosensoren. Diplomarbeit an der Uni Mainz:69.

Jin X, Chen AH, Gong HQ, Liang PJ (2005) Information transmission rate changes of retinal ganglion cells during contrast adaptation. Brain Res 1055:156-164.

Klusmann A, Fleischer W, Waldhaus A, Siebler M, Mayatepek E (2005) Influence of D-arabitol and ribitol on neuronal network activity. J Inherit Metab Dis 28:1181-1183.

Leger JF, Stern EA, Aertsen A, Heck D (2005) Synaptic integration in rat frontal cortex shaped by network activity. J Neurophysiol 93:281-293.

Li X, Zhou W, Liu M, Luo Q (2005) Synchronized spontaneous spikes on multi-electrode array show development of cultured neuronal network. Conf Proc IEEE Eng Med Biol Soc 2:2134-2137.

Martinoia S, Bonzano L, Chiappalone M, Tedesco M (2005) Electrophysiological activity modulation by chemical stimulation in networks of cortical neurons coupled to microelectrode arrays: A biosensor for neuropharmacological applications. Sensors and Actuators B: Chemical 108:589-596.

Mikkonen JE, Penttonen M (2005) Frequency bands and spatiotemporal dynamics of beta burst stimulation induced afterdischarges in hippocampus in vivo. Neuroscience 130:239-247.

Otto F, Kieseier BC, Gortz P, Hartung HP, Siebler M (2005) The pentapeptide QYNAD does not inhibit neuronal network activity. Can J Neurol Sci 32:344-348.

Potter SM, Wagenaar DA, DeMarse TB (2005) Closing the loop: Stimulation feedback systems for embodies MEA cultures. Springer:32.

van Pelt J, Vajda I, Wolters PS, Corner MA, Ramakers GJ (2005) Dynamics and plasticity in developing neuronal networks in vitro. Prog Brain Res 147:173-188.

Yvon C, Rubli R, Streit J (2005) Patterns of spontaneous activity in unstructured and minimally structured spinal networks in culture. Exp Brain Res 165:139-151.

Baruchi I, Ben-Jacob E (2004) Functional holography of recorded neuronal networks activity. Neuroinformatics 2:333-352.

Beggs JM, Plenz D (2004) Neuronal avalanches are diverse and precise activity patterns that are stable for many hours in cortical slice cultures. J Neurosci 24:5216-5229.

Chiappalone M, Novellino A, Vajda I, Vato A, Martinoia S, van Pelt J (2004) Burst detection algorithms for the analysis of spatio-temporal patterns in cortical networks of neurons. Neurocomputing 65-66:653-662.

Cozzi L, D'Angelo P, Ide AN, Novellino A, Sanguineti V (2004) Coding and decoding performance in a bi-directional neural interface between in vitro cultured neurons and a mobile robot.

Darbon P, Yvon C, Legrand JC, Streit J (2004) INaP underlies intrinsic spiking and rhythm generation in networks of cultured rat spinal cord neurons. Eur J Neurosci 20:976-988.

Eytan D, Minerbi A, Ziv N, Marom S (2004) Dopamine-induced dispersion of correlations between action potentials in networks of cortical neurons. J Neurophysiol 92:1817-1824.

Gortz P, Fleischer W, Rosenbaum C, Otto F, Siebler M (2004) Neuronal network properties of human teratocarcinoma cell line-derived neurons. Brain Res 1018:18-25.

Hastings MH, Herzog ED (2004) Clock genes, oscillators, and cellular networks in the suprachiasmatic nuclei. J Biol Rhythms 19:400-413.

Hulata E, Baruchi I, Segev R, Shapira Y, Ben-Jacob E (2004) Self-regulated complexity in cultured neuronal networks. Phys Rev Lett 92:198105.

Legrand JC, Darbon P, Streit J (2004) Contributions of NMDA receptors to network recruitment and rhythm generation in spinal cord cultures. Eur J Neurosci 19:521-532.

Marshall SP, Lang EJ (2004) Inferior olive oscillations gate transmission of motor cortical activity to the cerebellum. J Neurosci 24:11356-11367.

Nam Y, Wheeler BC (2004) Multichannel recording and stimulation of neuronal cultures grown on microstamped poly-D-lysin.

Potter SM, Bakkum DJ, Shkolnik A, Bu-Ary G, Gamblen P, DeMarse TB (2004) Removing some "A" from AI: Embodied Cultured Networks. Springer:17.

Stillo G, Bonzano L, Chiappalone M, Vato A, Davide FA, Martinoia S (2004) Burst on Hurst algorithm for detecting activity patterns in networks of cortical neurons. International Journal of Information Technology 1.

Van Pelt J, Corner MA, Wolters PS, Rutten WL, Ramakers GJ (2004) Longterm stability and developmental changes in spontaneous network burst firing patterns in dissociated rat cerebral cortex cell cultures on multielectrode arrays. Neurosci Lett 361:86-89.

van Pelt J, Wolters PS, Corner MA, Rutten WL, Ramakers GJ (2004) Long-term characterization of firing dynamics of spontaneous bursts in cultured neural networks. IEEE Trans Biomed Eng 51:2051-2062.

Yvert B, Branchereau P, Meyrand P (2004) Multiple spontaneous rhythmic activity patterns generated by the embryonic mouse spinal cord occur within a specific developmental time window. J Neurophysiol 91:2101-2109.

Butovas S, Schwarz C (2003) Spatiotemporal effects of microstimulation in rat neocortex: a parametric study using multielectrode recordings. J Neurophysiol 90:3024-3039.

Darbon P, Tscherter A, Yvon C, Streit J (2003) Role of the electrogenic Na/K pump in disinhibition-induced bursting in cultured spinal networks. J Neurophysiol 90:3119-3129.

de Weerth S, Ross JD, Prado GR, Choi Y, Allen M, La Placa M (2003) A novel system for Measurememt of electrophysiological Signals associeted with traumatic neuronal injury. 7th International Conference on M Chemical an Biochemical Analysis Systems.

Deransart C, Hellwig B, Heupel-Reuter M, Leger JF, Heck D, Lucking CH (2003) Single-unit analysis of substantia nigra pars reticulata neurons in freely behaving rats with genetic absence epilepsy. Epilepsia 44:1513-1520.

Eytan D, Brenner N, Marom S (2003) Selective adaptation in networks of cortical neurons. J Neurosci 23:9349-9356.

Potter SM, DeMarse TB, Wagenaar A, Madhavan R (2003) Long-Term Bidirectional Neuron Interfaces for Robotic Control, and In Vitro Learning Studies. Proceedings of the IEEE-EMBS:4.

Segev R, Benveniste M, Shapira Y, Ben-Jacob E (2003) Formation of electrically active clusterized neural networks. Phys Rev Lett 90:168101.

Corner MA, van Pelt J, Wolters PS, Baker RE, Nuytinck RH (2002) Physiological effects of sustained blockade of excitatory synaptic transmission on spontaneously active developing neuronal networks--an inquiry into the reciprocal linkage between intrinsic biorhythms and neuroplasticity in early ontogeny. Neurosci Biobehav Rev 26:127-185.

Egert U, Heck D, Aertsen A (2002) Two-dimensional monitoring of spiking networks in acute brain slices. Exp Brain Res 142:268-274.

Hardingham GE, Fukunaga Y, Bading H (2002) Extrasynaptic NMDARs oppose synaptic NMDARs by triggering CREB shut-off and cell death pathways. Nat Neurosci 5:405-414.

Marom S, Shahaf G (2002) Development, learning and memory in large random networks of cortical neurons: lessons beyond anatomy. Q Rev Biophys 35:63-87.

Segev R, Benveniste M, Hulata E, Cohen N, Palevski A, Kapon E, Shapira Y, Ben-Jacob E (2002) Long term behavior of lithographically prepared in vitro neuronal networks. Phys Rev Lett 88:118102.

Hardingham GE, Arnold FJ, Bading H (2001) A calcium microdomain near NMDA receptors: on switch for ERK-dependent synapse-to-nucleus communication. Nat Neurosci 4:565-566.

Potter SM (2001) Distributed processing in cultured neuronal networks. Prog Brain Res 130:49-62.

Segev R, Shapira Y, Benveniste M, Ben-Jacob E (2001) Observations and modeling of synchronized bursting in two-dimensional neural networks. Phys Rev E Stat Nonlin Soft Matter Phys 64:011920.

Shahaf G, Marom S (2001) Learning in networks of cortical neurons. J Neurosci 21:8782-8788.

Streit J, Tscherter A, Heuschkel MO, Renaud P (2001) The generation of rhythmic activity in dissociated cultures of rat spinal cord. Eur J Neurosci 14:191-202.

Tscherter A, Heuschkel MO, Renaud P, Streit J (2001) Spatiotemporal characterization of rhythmic activity in rat spinal cord slice cultures. Eur J Neurosci 14:179-190.

Singer W (2000) Why use more than one electrode at a time? TINS:6.